1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
CGGCGCGGAGGAGGGGTTGGAGGTGGCCAAGCTCGGGATCTCGCCCAAGATCGTCAGCCAGCTCGCCTCGCGCGGCATAACCAAGCTGTTCCCAATCCAGgtatcaggagccggcagtccccccatcttctgttccatttccaattgaatcgtgaacaatttgttccttgaatcatactttcgtagcgaaagtttcatcc...
species | Oryza sativa |
transcript | LOC_Os12g41715.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TCGTCAGCCAGCTCGCCTCGCGCGGCATAACCAAGCTGTTCCCAATCCAG AGAGCTGTCCTTGAACCAGCAATGCAAGGAAAGGACATGGTTGGTCGTGCCEST: gi|29658735|gb|CB655010.1|CB655010
genomic: TCGTCAGCCAGCTCGCCTCGCGCGGCATAACCAAGCTGTTCCCAATCCAGgtatcaggag ... ctctgcgcagAGAGCTGTCCTTGAACCAGCAATGCAAGGAAAGGACATGGTTGGTCGTGCC
EST: TCGTCAGCCAGCTCGCCTCGCGCGGCATAACCAAGCTGTTCCCAATCCAG AGAGCTGTCCTTGAACCAGCAATGCAAGGAAAGGACATGGTTGGTCGTGCC
genomic: TCGTCAGCCAGCTCGCCTCGCGCGGCATAACCAAGCTGTTCCCAATCCAGgtatcaggag ... ctctgcgcagAGAGCTGTCCTTGAACCAGCAATGCAAGGAAAGGACATGGTTGGTCGTGCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGGCGCGGAGGAGGGGTTGGAGGTGGCCAAGCTCGGGATCTCGCCCAAGATCGTCAGCCAGCTCGCCTCGCGCGGCATAACCAAGCTGTTCCCAATCCAGgtatcaggagccggcagtccccccatcttctgttccatttccaattgaatcgtgaacaatttgttccttgaatcatactttcgtagcgaaagtttcatcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gccggca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tcccccc