1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
GATTAGTTACCCTTTGTCTCGGTTCTTGGTGCGTGGTCAATCGGGACTACAGAGAATTGGAGTTTCTTGTGGGAGTTTCAGGGTCACTTCGAGGTGAAAGgttcgttgaatggtaaagttaggtgttcttatgctgtcttggtgttgggctcagtgatttgatttgatttgcttctgtttgatcacag
species | Oryza sativa |
transcript | LOC_Os12g40490.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TTATAATTGGAGTTTCTTGTGGTATTTTCAGGGTCACTTCGAGGTGAAAG CGGACTGAGCGGGAGGCGAGGCGATCGACGGCGAACTGAATTCCTAGTTTGEST: gi|88322002|gb|CI673152.1|CI673152
genomic: AGAGAATTGGAGTTTCTTGTGGGAGTTTCAGGGTCACTTCGAGGTGAAAGgttcgttgaa ... ttgatcacagCGGACTGAGCGGGAGGCGAGGCGATCGACGGCGAACTGAATTCCTAGTTTG
EST: AGAGAATTGGAGTTTCTTGTGGGAGTTTCAGGGTCACTTCGAGGTGAAAG CGGACTGAGCGGGAGGCGAGGCGATCGACGGCGAACTGAATTCCTAGTTTGEST: gi|88391277|gb|CI595531.1|CI595531
genomic: AGAGAATTGGAGTTTCTTGTGGGAGTTTCAGGGTCACTTCGAGGTGAAAGgttcgttgaa ... ttgatcacagCGGACTGAGCGGGAGGCGAGGCGATCGACGGCGAACTGAATTCCTAGTTTG
EST: AGAGAATTGGAGTTTCTTGTGGGAGTTTCAGGGTCAATTCGAGGTGAAAG CGGACTGAGCGGGAGGCGAGGCGATCGACGGCGAACTGAATTCCTAGTTTGEST: gi|29632389|gb|CB637398.1|CB637398
genomic: AGAGAATTGGAGTTTCTTGTGGGAGTTTCAGGGTCACTTCGAGGTGAAAGgttcgttgaa ... ttgatcacagCGGACTGAGCGGGAGGCGAGGCGATCGACGGCGAACTGAATTCCTAGTTTG
EST: AGAGAATTGGAGTTTCTTGTGGGAGTTTCAGGGTCACTTCGAGGTGAAAG CGGACTGAGCGGGAGGCGAGGCGATCGACTGCGAACTGAATTCCTAGTTTGEST: gi|88733513|gb|CI756690.1|CI756690
genomic: AGAGAATTGGAGTTTCTTGTGGGAGTTTCAGGGTCACTTCGAGGTGAAAGgttcgttgaa ... ttgatcacagCGGACTGAGCGGGAGGCGAGGCGATCGACGGCGAACTGAATTCCTAGTTTG
EST: AGAGAATTGGAGTTTCTTGTGGGAGTTTCAGGGTCACTTCGAGGTGAAAG CGGACTGAGCGGGAGGCGAGGCGATCGACGGCGAACTGAATTCCTAGTTTGEST: gi|88593039|gb|CI711188.1|CI711188
genomic: AGAGAATTGGAGTTTCTTGTGGGAGTTTCAGGGTCACTTCGAGGTGAAAGgttcgttgaa ... ttgatcacagCGGACTGAGCGGGAGGCGAGGCGATCGACGGCGAACTGAATTCCTAGTTTG
EST: AGAGAATTGGAGTTTCTTGTGGGAGTTTCAGGGTCACTTCGAGGTGAAAG CGGACTGAGCGGGAGGCGAGGCGATCGACGGCGAACTGAATTCCTAGTTTGEST: gi|88737536|gb|CI759417.1|CI759417
genomic: AGAGAATTGGAGTTTCTTGTGGGAGTTTCAGGGTCACTTCGAGGTGAAAGgttcgttgaa ... ttgatcacagCGGACTGAGCGGGAGGCGAGGCGATCGACGGCGAACTGAATTCCTAGTTTG
EST: AGAGAATTGGAGTTTCTTGTGGGAGTTTCAGGGTCACTTCGAGGTGAAAG CGGACTGAGCGGGAGGCGAGGCGATCGACGGCGAACTGAATTCCTAGTTTGEST: gi|88367909|gb|CI572630.1|CI572630
genomic: AGAGAATTGGAGTTTCTTGTGGGAGTTTCAGGGTCACTTCGAGGTGAAAGgttcgttgaa ... ttgatcacagCGGACTGAGCGGGAGGCGAGGCGATCGACGGCGAACTGAATTCCTAGTTTG
EST: AGAGAATTGGAGTTTCTTGTGGGAGTTTCAGGGTCACTTCGAGGTGAAAG CGGACTGAGCGGGAGGCGAGGCGATCGACGGCGAACTGAATTCCTAGTTTGEST: gi|88581980|gb|CI699200.1|CI699200
genomic: AGAGAATTGGAGTTTCTTGTGGGAGTTTCAGGGTCACTTCGAGGTGAAAGgttcgttgaa ... ttgatcacagCGGACTGAGCGGGAGGCGAGGCGATCGACGGCGAACTGAATTCCTAGTTTG
EST: AGAGAATTGGAGTTTCTTGTGGGAGTTTCAGGGTCACTTCGAGGTGAAAG CGGACTGAGCGGGAGGCGAGGCGATCGACGGCGAACTGAATTCCTAGTTTGEST: gi|33678894|gb|CF307133.1|CF307133
genomic: AGAGAATTGGAGTTTCTTGTGGGAGTTTCAGGGTCACTTCGAGGTGAAAGgttcgttgaa ... ttgatcacagCGGACTGAGCGGGAGGCGAGGCGATCGACGGCGAACTGAATTCCTAGTTTG
EST: AGAGAATTGGAGTTTCTTGTGGGAGTTTCAGGGTCACTTCGAGGTGAAAG CGGACTGAGCGGGAGGCGAGGCGATCGACGGCGAACTGAATTCCTAGTTTGEST: gi|88826328|gb|CI776893.1|CI776893
genomic: AGAGAATTGGAGTTTCTTGTGGGAGTTTCAGGGTCACTTCGAGGTGAAAGgttcgttgaa ... ttgatcacagCGGACTGAGCGGGAGGCGAGGCGATCGACGGCGAACTGAATTCCTAGTTTG
EST: AGAGAATTGGAGTTTCTTGTGGGAGTTTCAGGGTCACTTCGAGGTGAAAG CGGACTGAGCGGGAGGCGAGGCGATCGACGGCGAACTGAATTCCTAGTTTGEST: gi|88317739|gb|CI672328.1|CI672328
genomic: AGAGAATTGGAGTTTCTTGTGGGAGTTTCAGGGTCACTTCGAGGTGAAAGgttcgttgaa ... ttgatcacagCGGACTGAGCGGGAGGCGAGGCGATCGACGGCGAACTGAATTCCTAGTTTG
EST: AGAGAATTGGAGTTTCTTGTGGGAGTTTCAGGGTCACTTCGAGGTGAAAG CGGACTGAGCGGGAGGCGAGGCGATCGACGGCGAACTGAATTCCTAGTTTGEST: gi|29635157|gb|CB640166.1|CB640166
genomic: AGAGAATTGGAGTTTCTTGTGGGAGTTTCAGGGTCACTTCGAGGTGAAAGgttcgttgaa ... ttgatcacagCGGACTGAGCGGGAGGCGAGGCGATCGACGGCGAACTGAATTCCTAGTTTG
EST: AGAGAATTGGAGTTTCTTGTGGGAGTTTCAGGGTCACTTCGAGGTGAAAG CGGACTGAGCGGGAGGCGAGGCGATCGACGGCGAACTGAATTCCTAGTTTGEST: gi|29630464|gb|CB635473.1|CB635473
genomic: AGAGAATTGGAGTTTCTTGTGGGAGTTTCAGGGTCACTTCGAGGTGAAAGgttcgttgaa ... ttgatcacagCGGACTGAGCGGGAGGCGAGGCGATCGACGGCGAACTGAATTCCTAGTTTG
EST: AGAGAATTGGAGTTTCTTGTGGGAGTTTCAGGGTCACTTCGAGGTGAAAG CGGACTGAGCGGGAGGCGAGGCGATCGACGGCGAACTGAATTCCTAGTTTGEST: gi|29627991|gb|CB633002.1|CB633002
genomic: AGAGAATTGGAGTTTCTTGTGGGAGTTTCAGGGTCACTTCGAGGTGAAAGgttcgttgaa ... ttgatcacagCGGACTGAGCGGGAGGCGAGGCGATCGACGGCGAACTGAATTCCTAGTTTG
EST: AGAGAATTGGAGTTTCTTGTGGGAGTTTCAGGGTCACTTCGAGGTGAAAG CGGACTGAGCGGGAGGCGAGGCGATCGACGGCGAACTGAATTCCTAGTTTGEST: gi|88412122|gb|CI566851.1|CI566851
genomic: AGAGAATTGGAGTTTCTTGTGGGAGTTTCAGGGTCACTTCGAGGTGAAAGgttcgttgaa ... ttgatcacagCGGACTGAGCGGGAGGCGAGGCGATCGACGGCGAACTGAATTCCTAGTTTG
EST: AGAGAATTGGAGTTTCTTGTGGGAGTTTCAGGGTCACTTCGAGGTGAAAG CGGACTGAGCGGGAGGCGAGGCGATCGACGGCGAACTGAATTCCTAGTTTG
genomic: AGAGAATTGGAGTTTCTTGTGGGAGTTTCAGGGTCACTTCGAGGTGAAAGgttcgttgaa ... ttgatcacagCGGACTGAGCGGGAGGCGAGGCGATCGACGGCGAACTGAATTCCTAGTTTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GATTAGTTACCCTTTGTCTCGGTTCTTGGTGCGTGGTCAATCGGGACTACAGAGAATTGGAGTTTCTTGTGGGAGTTTCAGGGTCACTTCGAGGTGAAAGgttcgttgaatggtaaagttaggtgttcttatgctgtcttggtgttgggctcagtgatttgatttgatttgcttctgtttgatcacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG