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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCGGGATTGGGATTACGCCAGGTTCAGGGCCATCGCGGATAAGTGCGGCGCCATGTTGCTCTGCGACATGGCTCACATCAGTGGCCTAGTTGCCGCGCAGgtatggaattgtttgtgttcctgtgtccttatgtaattgtgctctaaattgcatttgcctagttggtcgggttctcgatttattggtattaaattttagt...

Basic information

species Oryza sativa
transcript LOC_Os12g22030.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29661231|gb|CB657506.1|CB657506
EST:     CCATGTTGCTCTGCGACATGGCTCACATCAGTGGCCTAGTTGCCGCGCAG                         GAGGCTGCAAATCCTTTTCAATATTCTGATGTGGTTACCACCACCACCCAC
genomic: CCATGTTGCTCTGCGACATGGCTCACATCAGTGGCCTAGTTGCCGCGCAGgtatggaatt ... acttttgtagGAGGCTGCAAATCCTTTTCAATATTCTGATGTGGTTACCACCACCACCCAC
EST: gi|218487744|gb|FG962551.1|FG962551
EST:     CCATGTTGCTCTGCGACATGGCTCACATCAGTGGCCTAGTTGCCGCGCAG                         GAGGCTGCAAATCCTTTTCAATATTCTGATGTGGTTACCACCACCACCCAC
genomic: CCATGTTGCTCTGCGACATGGCTCACATCAGTGGCCTAGTTGCCGCGCAGgtatggaatt ... acttttgtagGAGGCTGCAAATCCTTTTCAATATTCTGATGTGGTTACCACCACCACCCAC
EST: gi|58683023|gb|CK071710.1|CK071710
EST:     CCATGTTGCTCTGCGACATGGCTCACATCAGTGGCCTAGTTGCCGCGCAG                         GAGGCTGCAAATCCTTTTCAATATTCTGATGTGGTTACCACCACCACCCAC
genomic: CCATGTTGCTCTGCGACATGGCTCACATCAGTGGCCTAGTTGCCGCGCAGgtatggaatt ... acttttgtagGAGGCTGCAAATCCTTTTCAATATTCTGATGTGGTTACCACCACCACCCAC