1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
TGGGGATGGAGGTGCTGTACCAGGTGCTCGGGTGGGTCGCCTTCTTCGCTTGGTCCTTCAGCTTCTACCCGCAGGTCTTCCTCAACTTCAAGCGCAAGAGgtgacggatttttctatctcccttttcccccctcatcctctgatttgctcgtggctagccatttcttggcttatattattgctgtgtttgaattctgtgt...
species | Oryza sativa |
transcript | LOC_Os12g18110.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TGGTCCTTCAGCTTCTACCCGCAGGTCTTCCTCAACTTCAAGCGCAAGAG TGTGGTGGGTCTGAACTTTGATTTTCTGGTGTTGAACTTGACAAAGCACTCEST: gi|88693439|gb|CI737014.1|CI737014
genomic: TGGTCCTTCAGCTTCTACCCGCAGGTCTTCCTCAACTTCAAGCGCAAGAGgtgacggatt ... ttgattgcagTGTGGTGGGTCTGAACTTTGATTTTCTGGTGTTGAACTTGACAAAGCACTC
EST: TGGTCCTTCAGCTTCTACCCGCAGGTCTTCCTCAACTTCAAGCGCAAGAG TGTGGTGGGTCTGAACTTTGATTTTCTGGTGTTGAACTTGACAAAGCACTCEST: gi|88574642|gb|CI666411.1|CI666411
genomic: TGGTCCTTCAGCTTCTACCCGCAGGTCTTCCTCAACTTCAAGCGCAAGAGgtgacggatt ... ttgattgcagTGTGGTGGGTCTGAACTTTGATTTTCTGGTGTTGAACTTGACAAAGCACTC
EST: TGGTCCTTCAGCTTCTACCCGCATGTCTTCCTCAACTTCAAGCGCAAGAG TGTGGTGGGTCTGAACTTTGATTTTCTGGTGTTGAACTTGACAAAGCACTCEST: gi|9886160|gb|AU066053.2|AU066053
genomic: TGGTCCTTCAGCTTCTACCCGCAGGTCTTCCTCAACTTCAAGCGCAAGAGgtgacggatt ... ttgattgcagTGTGGTGGGTCTGAACTTTGATTTTCTGGTGTTGAACTTGACAAAGCACTC
EST: TGGTCCTTCAGCTTCTACCCGCA-GTCTTCCTCAACTTCAAGCGCAAGAG TGTGGTGGGTCTGAACTTTGATTTTCTGGTGTTGAACTTGACAAAGCACTCEST: gi|56157764|gb|C26318.2|C26318
genomic: TGGTCCTTCAGCTTCTACCCGCAGGTCTTCCTCAACTTCAAGCGCAAGAGgtgacggatt ... ttgattgcagTGTGGTGGGTCTGAACTTTGATTTTCTGGTGTTGAACTTGACAAAGCACTC
EST: TGGTCCTTCAGCTTCTACCCGCAGGTCTTCCTCAACTTCAAGCGCAAGAG TGTGGTGGGTCTGAACTTTGATTTTCTGGTGTTGAACTTGACAAAGCACTC
genomic: TGGTCCTTCAGCTTCTACCCGCAGGTCTTCCTCAACTTCAAGCGCAAGAGgtgacggatt ... ttgattgcagTGTGGTGGGTCTGAACTTTGATTTTCTGGTGTTGAACTTGACAAAGCACTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGGGGATGGAGGTGCTGTACCAGGTGCTCGGGTGGGTCGCCTTCTTCGCTTGGTCCTTCAGCTTCTACCCGCAGGTCTTCCTCAACTTCAAGCGCAAGAGgtgacggatttttctatctcccttttcccccctcatcctctgatttgctcgtggctagccatttcttggcttatattattgctgtgtttgaattctgtgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccccctc