1 5' 3' | 2 5' 3' | 3 5' 3' |
CGTCGTCGTCTCCGCCATGTCCGGCGTCCACCTCCGCAGCCACAACCTCATGCTCCAGCTCAAGCTTGTCGAGGCCATCAAAGAAGCTGGAAATGTCAAGgtaatttatttttcaatcagctccacaaattagtacataattaaaagaacttgatttggctgtgtatatcttatttctgtccattatcttgaaaaataaa...
species | Oryza sativa |
transcript | LOC_Os12g16220.2 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TGCTCCAGCTCAAGCTTGTCGAGGCCATCAAAGAAGCTGGAAATGTCAAG CGTTTCCTGCCGTCAGAATTTGGCATGGATCCATCAAGGATGGGGAATGCTEST: gi|88325588|gb|CI675397.1|CI675397
genomic: TGCTCCAGCTCAAGCTTGTCGAGGCCATCAAAGAAGCTGGAAATGTCAAGgtaatttatt ... ctgcgagcagCGTTTCCTGCCGTCAGAATTTGGCATGGATCCATCAAGGATGGGGAATGCT
EST: TGCTCCAGCTCAAGCTTGTCGAGGCCATCAAAGAAGCTGGAAATGTCAAG CGTTTCCTGCCGTCAGAATTTGEST: gi|88571323|gb|CI662696.1|CI662696
genomic: TGCTCCAGCTCAAGCTTGTCGAGGCCATCAAAGAAGCTGGAAATGTCAAGgtaatttatt ... ctgcgagcagCGTTTCCTGCCGTCAGAATTTG
EST: TGCTCCAGCTCAAGCTTGTCGAGGCCATCAAAGAAGCTGGAAATGTCAAG CGTTTCCTGCCGTCAEST: gi|88355439|gb|CI679156.1|CI679156
genomic: TGCTCCAGCTCAAGCTTGTCGAGGCCATCAAAGAAGCTGGAAATGTCAAGgtaatttatt ... ctgcgagcagCGTTTCCTGCCGTCA
EST: TGCTCCAGCTCAAGCTTGTCGAGGCCATCAAAGAAGCTGGAAATGTCAAG CGTTTCCTGCCGTCAGAATTTGGCATGGEST: gi|88411764|gb|CI571256.1|CI571256
genomic: TGCTCCAGCTCAAGCTTGTCGAGGCCATCAAAGAAGCTGGAAATGTCAAGgtaatttatt ... ctgcgagcagCGTTTCCTGCCGTCAGAATTTGGCATGG
EST: TGCTCCAGCTCAAGCTTGTCGAGGCCATCAAAGAAGCTGGAAATGTCAAG CGTTTCCTGCCGTCAGAATTTGGCATGGATCCEST: gi|88345370|gb|CI656028.1|CI656028
genomic: TGCTCCAGCTCAAGCTTGTCGAGGCCATCAAAGAAGCTGGAAATGTCAAGgtaatttatt ... ctgcgagcagCGTTTCCTGCCGTCAGAATTTGGCATGGATCC
EST: TGCTCCAGCTCAAGCTTGTCGAGGCCATCAAAGAAGCTGGAAATGTCAAG CGTTTCCTGCCGTEST: gi|88347930|gb|CI636023.1|CI636023
genomic: TGCTCCAGCTCAAGCTTGTCGAGGCCATCAAAGAAGCTGGAAATGTCAAGgtaatttatt ... ctgcgagcagCGTTTCCTGCCGT
EST: TGCTCCAGCTCAAGCTTGTCGAGGCCATCAAAGAAGCTGGAAATGTCAAG CGTTTCCTGCCGTCAGAATTEST: gi|88296297|gb|CI669073.1|CI669073
genomic: TGCTCCAGCTCAAGCTTGTCGAGGCCATCAAAGAAGCTGGAAATGTCAAGgtaatttatt ... ctgcgagcagCGTTTCCTGCCGTCAGAATT
EST: TGCTCCAGCTCAAGCTTGTCGAGGCCATCAAAGAAGCTGGAAATGTCAAG CGTTTCCTGCCGTCAGAATTTGGCATGGATCCATCAGGGATGGGGAAEST: gi|29660598|gb|CB656873.1|CB656873
genomic: TGCTCCAGCTCAAGCTTGTCGAGGCCATCAAAGAAGCTGGAAATGTCAAGgtaatttatt ... ctgcgagcagCGTTTCCTGCCGTCAGAATTTGGCATGGATCCATCAAGGATGGGGAA
EST: TGCTCCAGCTCAAGCTTGTCGAGGCCATCAAAGAAGCTGGAAATGTCAAG CGTTTCCTGCCGTCAGAATTTGGCATGGATCCATCAAGGATGGGGAATGCTEST: gi|88580829|gb|CI697786.1|CI697786
genomic: TGCTCCAGCTCAAGCTTGTCGAGGCCATCAAAGAAGCTGGAAATGTCAAGgtaatttatt ... ctgcgagcagCGTTTCCTGCCGTCAGAATTTGGCATGGATCCATCAAGGATGGGGAATGCT
EST: TGCTCCAGCTCAAGCTTGTCGAGGCCATCAAAGAAGCTGGAAATGTCAAG CGTTTCCTGCCEST: gi|88851506|gb|CI670946.1|CI670946
genomic: TGCTCCAGCTCAAGCTTGTCGAGGCCATCAAAGAAGCTGGAAATGTCAAGgtaatttatt ... ctgcgagcagCGTTTCCTGCC
EST: TGCTCCAGCTCAAGCTTGTCGAGGCCATCAAAGAAGCTGGAAATGTCAAG CGTTTCCTGCCGTCAGEST: gi|88574644|gb|CI666413.1|CI666413
genomic: TGCTCCAGCTCAAGCTTGTCGAGGCCATCAAAGAAGCTGGAAATGTCAAGgtaatttatt ... ctgcgagcagCGTTTCCTGCCGTCAG
EST: TGCTCCAGCTCAAGCTTGTCGAGGCCATCAAAGAAGCTGGAAATGTCAAG CGTTTCCTGCCGTCAEST: gi|88392098|gb|CI683929.1|CI683929
genomic: TGCTCCAGCTCAAGCTTGTCGAGGCCATCAAAGAAGCTGGAAATGTCAAGgtaatttatt ... ctgcgagcagCGTTTCCTGCCGTCA
EST: TGCTCCAGCTCAAGCTTGTCGAGGCCATCAAAGAAGCTGGAAATGTCAAG CGTTTCCTGCCGTCAGAATTTGGCATGGATCCATCAAGGATGGGGAATGCTEST: gi|29660599|gb|CB656874.1|CB656874
genomic: TGCTCCAGCTCAAGCTTGTCGAGGCCATCAAAGAAGCTGGAAATGTCAAGgtaatttatt ... ctgcgagcagCGTTTCCTGCCGTCAGAATTTGGCATGGATCCATCAAGGATGGGGAATGCT
EST: ATCAAAGAAGCTGGAAATGTCAAG CGTTTCCTGCCGTCAGAATTTGGCATGGATCCATCAAGGATGGGGAATGCTEST: gi|88449574|gb|CI579854.1|CI579854
genomic: ATCAAAGAAGCTGGAAATGTCAAGgtaatttatt ... ctgcgagcagCGTTTCCTGCCGTCAGAATTTGGCATGGATCCATCAAGGATGGGGAATGCT
EST: TGCTCCAGCTCAAGCTTGTCGAGGCCATCAAAGAAGCTGGAAATGTCAAG CGTTTCCTGCCGTCAGAATTTGGCATGGATCCATEST: gi|25799331|gb|CA755292.1|CA755292
genomic: TGCTCCAGCTCAAGCTTGTCGAGGCCATCAAAGAAGCTGGAAATGTCAAGgtaatttatt ... ctgcgagcagCGTTTCCTGCCGTCAGAATTTGGCATGGATCCAT
EST: TGCTCCAGCTCAAGCTTGTCGAGGCCATCAAAGAAGCTGGAAATGTCAAG CGTTTCCTGCCGTCAGAATTTGGCATGGATCCATCAAGGATGGGGAATGCTEST: gi|38469582|gb|CF953713.1|CF953713
genomic: TGCTCCAGCTCAAGCTTGTCGAGGCCATCAAAGAAGCTGGAAATGTCAAGgtaatttatt ... ctgcgagcagCGTTTCCTGCCGTCAGAATTTGGCATGGATCCATCAAGGATGGGGAATGCT
EST: TGCTCCAGCTCAAGCTTGTCGAGGCCATCAAAGAAGCTGGAAATGTCAAG CGTTTCCTGCCGTCAGAATTTGGCATGGATCCATCAAGGATGGGGAATGCTEST: gi|88340972|gb|CI638528.1|CI638528
genomic: TGCTCCAGCTCAAGCTTGTCGAGGCCATCAAAGAAGCTGGAAATGTCAAGgtaatttatt ... ctgcgagcagCGTTTCCTGCCGTCAGAATTTGGCATGGATCCATCAAGGATGGGGAATGCT
EST: TGCTCCAGCTCAAGCTTGTCGAGGCCATCAAAGAAGCTGGAAATGTCAAG CGTTTCCTGCCGTCAGAATTTGGCATGGATCCATCAAGGATGGGGAATGCT
genomic: TGCTCCAGCTCAAGCTTGTCGAGGCCATCAAAGAAGCTGGAAATGTCAAGgtaatttatt ... ctgcgagcagCGTTTCCTGCCGTCAGAATTTGGCATGGATCCATCAAGGATGGGGAATGCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGTCGTCGTCTCCGCCATGTCCGGCGTCCACCTCCGCAGCCACAACCTCATGCTCCAGCTCAAGCTTGTCGAGGCCATCAAAGAAGCTGGAAATGTCAAGgtaatttatttttcaatcagctccacaaattagtacataattaaaagaacttgatttggctgtgtatatcttatttctgtccattatcttgaaaaataaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA