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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATGCTGCAGCAGACGCGGGTACCCGTGGTGGTCGACTACTACTCCCGGTGGATGGCCCGCTGGCCCACCGTGGACAGCCTCGCCGCCGCCACGCAGGAGgtgagattagggaaagatctctcctccactatcgctggaaaaaaaatgcaatgtttgatgaggtgtgtgcgagagtggtaatgaagttgtggatttgtggttgccgccgattgttgcag

Basic information

species Oryza sativa
transcript LOC_Os12g10850.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os12g10850.1 (Oryza sativa), 5'ss of exon 1
lower sequence: GRMZM2G425986_T01 (Zea mays), 5'ss of exon 1
GATGCTGCAGCAGACGCGGGTACCCGTGGTGGTCGACTACTACTCCCGGTGGATGGCCCGCTGGCCCACCGTGGACAGCCTCGCCGCCGCCACGCAGGAGgtgagattagggaaagatctctc---ctccacta---------------------tcgctggaaaaaaaatgcaatgtttga--tgaggtgtgtgcgag----agtggtaatgaagttgtggatttgtggttgccgccgattgttgcag
||||||||||||||||||||| |||||||| ||||  ||||||   ||||||||||| || ||||| |||||    |||||||||||||| |||||||||||  |   |  | || |  |       |  | ||                     |   ||     || || | || |||||    |  | | || |||    | || ||||  | || | |||| |||| |   |  | |||  ||||
GATGCTGCAGCAGACGCGGGTGCCCGTGGTCGTCGCTTACTACGAGCGGTGGATGGCGCGGTGGCCGACCGTACGAAGCCTCGCCGCCGCTACGCAGGAGgtacgcaaaaagcaatacttgataaatttgagtaagggaagcaaaataaatttcttttttgtggggaagattcgatctttgagcccaaatttttgtgaggttaaatgataatcgatttcttgattcgtggct--tgatgcttgccgcag