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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCTCTAAATTCAGATGGTTCACTACGAGATGCAGAGACAATGCTAGACCAGTTGAGTTTGCTGGGGAAAAAGATAACTCCTTCACTTGTCAATGATCTGgtaggttgcttgctatgatcagatctattgcttctattagtgactaaatattgctttgcattacatcaaaattgcaattttctacaatctgtacaatatt...

Basic information

species Oryza sativa
transcript LOC_Os12g10670.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os12g10670.1 (Oryza sativa), 5'ss of exon 1
lower sequence: GRMZM2G117028_T01 (Zea mays), 5'ss of exon 1
AGCTCTAAATTCAGATGGTTCACTACGAGATGCAGAGACAATGCTAGACCAGTTGAGTTTGCTGGGGAAAAAGATAACTCCTTCACTTGTCAATGATCTGgtaggttgcttgctatgatcagatctattgcttctattagtgactaaatattgctttgcattacatcaaaattgcaattt-tctacaatctgtacaatatt-----
|||||| ||||||||||| || |||||||||||||| |||||| |||| || ||||| ||| | ||||||||||||||||||||||||||||||||| |||||  || |||||||||||||     ||   |||| ||| ||||  |||| ||||||| | ||||| |||||   | ||  |||   |||||||    |||     
AGCTCTGAATTCAGATGGCTCGCTACGAGATGCAGAAACAATGTTAGATCAATTGAGCTTGTTAGGGAAAAAGATAACTCCTTCACTTGTCAATGATTTGgtaaatttcttgctatgatca-----atcaattcttttaatgac-gaatagtgctttgaaatacatgaaaatgaaagttggtctctgatctgtattgcatttttcc

upper sequence: LOC_Os12g10670.1 (Oryza sativa), 5'ss of exon 1
lower sequence: GLYMA07G40180.1 (Glycine max), 5'ss of exon 3
AGCTCTAAATTCAGATGGTTCACTACGAGATGCAGAGACAATGCTAGACCAGTTGAGTTTGCTGGGGAAAAAGATAACTCCTTCACTTGTCAATGATCTGgtaggttgcttgctatgatcagatctattgcttctattagtgactaaatattgctttgcattacatcaaaattgcaattttctacaatctgtacaatatt----
 ||| | ||| ||||||||||||| ||||||||||| |||||| |||| ||  | |||||||||||||| |  || ||| |||| ||||||||||| |||||  |||  |||| |  || | |||| | |||  ||||  || ||  | |   ||    || | || | ||||    ||||  | |  ||  ||   ||     
TGCTATGAATGCAGATGGTTCACTTCGAGATGCAGAAACAATGTTAGAACAACTTAGTTTGCTGGGGAAGAGAATTACTACTTCTCTTGTCAATGAACTGgtgagtttgttgcaactatta-atctctggct--tattcatgtcttcaaacacctaattatgagatgataatttttttttttcaaaggctcaact-catcagct

upper sequence: LOC_Os12g10670.1 (Oryza sativa), 5'ss of exon 1
lower sequence: GLYMA17G00620.1 (Glycine max), 5'ss of exon 3
AGCTCTAAATTCAGATGGTTCACTACGAGATGCAGAGACAATGCTAGACCAGTTGAGTTTGCTGGGGAAAAAGATAACTCCTTCACTTGTCAATGATCTGgtaggttgcttgctatgatcagatctattgcttctattagtgactaaatattgctttgcattacatcaaaattgcaattttctacaa-tctgtacaatatt
 ||| | ||| ||||||||||||| ||||||||||| |||||| |||| ||  | |||||||||||||| |  || ||| |||| ||||||||||| || ||  |||  |||| |  || | |||| | |||| |    ||    ||| |     ||           |  ||    | ||| | |  ||| |     | |
TGCTATGAATGCAGATGGTTCACTTCGAGATGCAGAAACAATGTTAGAACAACTTAGTTTGCTGGGGAAGAGAATTACTACTTCTCTTGTCAATGAACTTgtgagtttgttgcaaccatta-atctttggcttattcatgttttcaaacacctgattatgaggtgatcatttttttttcttcaaaagctctattaggaagt

upper sequence: LOC_Os12g10670.1 (Oryza sativa), 5'ss of exon 1
lower sequence: Vv12s0035g01960.t01 (Vitis vinifera), 5'ss of exon 1
AGCTCTAAATTCAGATGGTTCACTACGAGATGCAGAGACAATGCTAGACCAGTTGAGTTTGCTGGGGAAAAAGATAACTCCTTCACTTGTCAATGATCTGgtaggttgcttgctatgatcagatc-tattgcttctattagtgactaaatattgctttgcattac-atcaaaattgcaattttctacaatctgtacaatatt
 ||  ||||| | |||||||| || ||||||||||| || ||| ||||||| ||||||||||||||||| |  || ||| | || ||||| ||||| || ||  |||     | ||| |   ||   |  |  |   | | |   ||||   |  ||    ||   || ||   ||     | ||| |      |  | |  
TGCCTTAAATGCTGATGGTTCCCTTCGAGATGCAGAAACTATGTTAGACCAATTGAGTTTGCTGGGGAAGAGAATCACTACGTCTCTTGTAAATGACCTTgtgagtttgcgaccatgcttccatgacacagtctggttcaatttttaaaccatttttatttttgtgattaattctgtttcctgctagagctccaaataca--