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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGAGCTCCTTGTCATTGATGAAGCTGCTGCTATTCCATTGCCAATTGTTAAGTCCTTGCTTGGTCCATACCTTGTTTTCCTATCATCCACTGTCAATGGgtatgtttgctttcctttcgaaatgagataacactgaaaatcatggttgtaatcattctggatgtttttgtattgaag

Basic information

species Oryza sativa
transcript LOC_Os12g07300.2
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os12g07300.1 (Oryza sativa), 5'ss of exon 1
lower sequence: GLYMA13G43960.1 (Glycine max), 5'ss of exon 11
TTGAGCTCCTTGTCATTGATGAAGCTGCTGCTATTCCATTGCCAATTGTTAAGTCCTTGCTTGGTCCATACCTTGTTTTCCTATCATCCACTGTCAATGGgtatgtttg-------ctttcctttcg---aaa------tgagataacactgaaaatcatggttgtaatcattctggatgtttttgtattgaag------
 ||| ||  | ||  ||||||||||||||||||||||| || | || || ||||| || ||||| ||||| || || ||||| || || ||||| ||||||||||| ||        ||| |||| |   |||      | |  | |    |||||  |   |   |   | | |  ||  ||||| |||          
CTGAACTGTTGGTTGTTGATGAAGCTGCTGCTATTCCACTGTCGATGGTGAAGTCTTTACTTGGACCATATCTGGTCTTCCTCTCTTCTACTGTTAATGGgtatgtatgactagtgttttgcttttggtgaaaccttccttatttcatgtcgaaaactactttaagaggaactattaatccttttgaattattagccatt

upper sequence: LOC_Os12g07300.1 (Oryza sativa), 5'ss of exon 1
lower sequence: GLYMA05G31850.1 (Glycine max), 5'ss of exon 10
TTGAGCTCCTTGTCATTGATGAAGCTGCTGCTATTCCATTGCCAATTGTTAAGTCCTTGCTTGGTCCATACCTTGTTTTCCTATCATCCACTGTCAATGGgtatgtttgctttcctttcgaaatgagataacactgaaaatcatggttgtaatcattctggatgtttttgtattgaag----------------------------------------------------------------------------------------
|||| ||  | ||  |||||||||| |||||||||||| ||||| | || ||||| ||||| || ||||| || || ||||| || || ||||| |||||||||   |  | |   ||     ||| ||    |   | ||||||         ||  |   | ||||||||   ||                                                                                         
TTGAACTGTTGGTTGTTGATGAAGCAGCTGCTATTCCACTGCCAGTGGTGAAGTCTTTGCTGGGCCCATATCTGGTCTTCCTGTCTTCTACTGTTAATGGgtattactaatgtttgtttttggtgaaatt-ttccatatatcatgccaaatgcaatgttttgt-tttttgtaaacaattatgatttttttttgtgacctcattagtcaattttacgtatcctcatgtggcttaattactgaatttttttttgtaactcattgaaag

upper sequence: LOC_Os12g07300.1 (Oryza sativa), 5'ss of exon 1
lower sequence: GLYMA08G15130.1 (Glycine max), 5'ss of exon 10
TTGAGCTCCTTGTCATTGATGAAGCTGCTGCTATTCCATTGCCAATTGTTAAGTCCTTGCTTGGTCCATACCTTGTTTTCCTATCATCCACTGTCAATGGgtatgtttgctttcctttcgaaatgagataacactgaaaatcatggttgtaatcattctggatgtttttgtattgaag-----------------------------------------------------------------------------------------------------------
|||| ||  | ||  |||||||||| |||||||||||| ||||| | || ||||| ||||| |||||||| || || ||||| || || ||||| ||||||| ||  |  | |   ||     ||| ||    |   | ||||||         ||| |   | ||||||||   ||                                                                                                            
TTGAACTGTTGGTTGTTGATGAAGCAGCTGCTATTCCACTGCCAGTGGTGAAGTCTTTGCTGGGTCCATATCTGGTCTTCCTGTCTTCTACTGTTAATGGgtgtgaataatgtttgtttttggtgaaat--ttccatatatcatgccaaatgcaattttttgtttttttgtaaacaattatcaatccttttgaactattagctgtttccttcctttccttagccaattttctgtctcctcatgtggcttaaatactgaccatttttttttgtaactcattgaaag

upper sequence: LOC_Os12g07300.1 (Oryza sativa), 5'ss of exon 1
lower sequence: Vv07s0031g01750.t01 (Vitis vinifera), 5'ss of exon 10
TTGAGCTCCTTGTCATTGATGAAGCTGCTGCTATTCCATTGCCAATTGTTAAGTCCTTGCTTGGTCCATACCTTGTTTTCCTATCATCCACTGTCAATGGgtatg-tttgctttcctt---tcgaaatgagataacactgaaaatcatggtt--gtaatcatt------ctggatgtttttgtattgaag--------------------------------------------------------------------------------------------------
|||| ||  | ||  |||||||||| || ||||||||||||||| |||| ||||| ||||||||||| || || |||||||| ||||| ||||| |||||||||| ||||  |   ||   |    ||  ||| |      || |  || ||  ||   ||||      | | | |   |||||||                                                                                                      
TTGAACTGTTGGTTGTTGATGAAGCAGCAGCTATTCCATTGCCAGTTGTCAAGTCTTTGCTTGGTCCTTATCTAGTTTTCCTTTCATCTACTGTAAATGGgtatggtttgtctctattaatttcttattggatcatgtcataagttgtgcttcagtggccattacattgccgaaagaacttgtattttccttgtccacccaatgtaaatctttctgtgtgttcttcaagtaattttaatgtcttctaaagatttaactgttgatatactttttgttttttactcaaag

upper sequence: LOC_Os12g07300.1 (Oryza sativa), 5'ss of exon 1
lower sequence: PP1S93_182V6.1 (Physcomitrella patens), 5'ss of exon 10
TTGAGCTCCTTGTCATTGATGAAGCTGCTGCTATTCCATTGCCAATTGTTAAGTCCTTGCTTGGTCCATACCTTGTTTTCCTATCATCCACTGTCAATGGgtatgtttgctttcctttcgaaatgagataacactgaaaatcatggttgtaatcattctggatgtttttgta--ttgaag----------------------------
  ||| | ||||| ||||||||||| ||||| ||||| ||||||||||| ||| |  | |||||||| ||  | || || ||||  || ||||| || ||||| |||    || |||    |||| | ||   | ||| |   ||   | ||     |  | || || ||    ||||||                            
CAGAGTTACTTGTAATTGATGAAGCAGCTGCAATTCCTTTGCCAATTGTGAAGGCTCTTCTTGGTCCGTATTTGGTCTTTCTATGTTCAACTGTGAACGGgtaagtt----tttcttatataatg-gctagtgcagaacaatctg--cgaaactgc-ccaggtgcttgtgagggttgaagtccagagtgaaacctgtgatctaggctt