1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
GCCGCCGCCCACGCCGACGCGAGGAGCACTCGCCGCCCGCCACCGCGCTCTCCCTCTCCCCCCAATTCCATCCCTCCACGCCACGATCGCCTTCCGCAAGgtaaccgccctcccctcgccgccgcggctcggagcttgcatgcatgcacgcatcatcatcatcggctcatcgcagatgtagggtagggacggtggtaagt...
species | Oryza sativa |
transcript | LOC_Os12g07110.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TCCCTCTCCCCCCAATTCCATCCCTCCACGCCACGATCGCCTTCCGCAAG GTTTCTTCTTCAGTGCACATGTGAAACTGTACTTCACCTCCCATATATAATEST: gi|58608417|gb|CK036450.1|CK036450
genomic: TCCCTCTCCCCCCAATTCCATCCCTCCACGCCACGATCGCCTTCCGCAAGgtaaccgccc ... tactatgcagGTTTCTTCTTCAGTGCACATGTGAAACTGTACTTCACCTCCCATATATAAT
EST: CCCTCTCCCCCCAATTCCATCCCTCCACGCCACGAGCGCCTTCTGCAAGG GTTTCTTCTTCAGTGCACATGTGAAACTGTACTTCACCTCCCATATATAAEST: gi|88305778|gb|CI633348.1|CI633348
genomic: CCCTCTCCCCCCAATTCCATCCCTCCACGCCACGATCGCCTTCCGCAA-Ggtaaccgccc ... tactatgcagGTTTCTTCTTCAGTGCACATGTGAAACTGTACTTCACCTCCCATATATAA
EST: TCCCTCTCCCCCCAATTCCATCCCTCCACGCCACGATCGCCTTCCGAAAG GTTTCTTCTTCAGTGCACATGTGAAACTGTACTTCACCTCCCATATATAATEST: gi|29674409|gb|CB670684.1|CB670684
genomic: TCCCTCTCCCCCCAATTCCATCCCTCCACGCCACGATCGCCTTCCGCAAGgtaaccgccc ... tactatgcagGTTTCTTCTTCAGTGCACATGTGAAACTGTACTTCACCTCCCATATATAAT
EST: TCCCTCTCCCCCCAATTCCATCCCTCCACGCCACGATCGCCTTCCGCAAG GTTTCTTCTTCAGTGCACATGTGAAACTGTACTTCACCTCCCATATATAATEST: gi|88340110|gb|CI650557.1|CI650557
genomic: TCCCTCTCCCCCCAATTCCATCCCTCCACGCCACGATCGCCTTCCGCAAGgtaaccgccc ... tactatgcagGTTTCTTCTTCAGTGCACATGTGAAACTGTACTTCACCTCCCATATATAAT
EST: TCCCTCTCCCCCCAATTCCATCCCTCCACGCCACGATCGCCTTCCGCAAG GTTTCTTCTTCAGTGCACATGTGAAACTGTACTTCACCTCCCATATATAATEST: gi|88354306|gb|CI637872.1|CI637872
genomic: TCCCTCTCCCCCCAATTCCATCCCTCCACGCCACGATCGCCTTCCGCAAGgtaaccgccc ... tactatgcagGTTTCTTCTTCAGTGCACATGTGAAACTGTACTTCACCTCCCATATATAAT
EST: TCCCTCTCCCCCCAATTCCATCCCTCCACGCCACGATCGCCTTCCGCAAG GTTTCTTCTTCAGTGCACATGTGAAACTGTACTTCACCTCCCATATATAATEST: gi|88334800|gb|CI647182.1|CI647182
genomic: TCCCTCTCCCCCCAATTCCATCCCTCCACGCCACGATCGCCTTCCGCAAGgtaaccgccc ... tactatgcagGTTTCTTCTTCAGTGCACATGTGAAACTGTACTTCACCTCCCATATATAAT
EST: TCCCTCTCCCCCCAATTCCATCCCTCCACGCCACGATCGCCTTCCGCAAG GTTTCTTCTTCAGTGCACATGTGAAACTGTACTTCACCTCCCATATATAATEST: gi|29614987|gb|CB620000.1|CB620000
genomic: TCCCTCTCCCCCCAATTCCATCCCTCCACGCCACGATCGCCTTCCGCAAGgtaaccgccc ... tactatgcagGTTTCTTCTTCAGTGCACATGTGAAACTGTACTTCACCTCCCATATATAAT
EST: TCCCTCTCCCCCCAATTCCATCCCTCCACGCCACGATCGCCTTCCGCAAG GTTTCTTCTTCAGTGCACATGTGAAACTGTACTTCACCTCCCATATATAATEST: gi|88692848|gb|CI736423.1|CI736423
genomic: TCCCTCTCCCCCCAATTCCATCCCTCCACGCCACGATCGCCTTCCGCAAGgtaaccgccc ... tactatgcagGTTTCTTCTTCAGTGCACATGTGAAACTGTACTTCACCTCCCATATATAAT
EST: TCCCTCTCCCCCCAATTCCATCCCTCCACGCCACGATCGCCTTCCGCAAG GTTTCTTCTTCAGTGCACATGTGAAACTGTACTTCACCTCCCATATATAATEST: gi|29614944|gb|CB619957.1|CB619957
genomic: TCCCTCTCCCCCCAATTCCATCCCTCCACGCCACGATCGCCTTCCGCAAGgtaaccgccc ... tactatgcagGTTTCTTCTTCAGTGCACATGTGAAACTGTACTTCACCTCCCATATATAAT
EST: TCCCTCTCCCCCCAATTCCATCCCTCCACGCCACGATCGCCTTCCGCAAG GTTTCTTCTTCAGTGCACATGTGAAACTGTACTTCACCTCCCATATATAATEST: gi|29675499|gb|CB671774.1|CB671774
genomic: TCCCTCTCCCCCCAATTCCATCCCTCCACGCCACGATCGCCTTCCGCAAGgtaaccgccc ... tactatgcagGTTTCTTCTTCAGTGCACATGTGAAACTGTACTTCACCTCCCATATATAAT
EST: TCCCTCTCCCCCCAATTCCATCCCTCCACGCCACGATCGCCTTCCGCAAG GTTTCTTCTTCAGTGCACATGTGAAACTGTACTTCACCTCCCATATATAATEST: gi|88363348|gb|CI643206.1|CI643206
genomic: TCCCTCTCCCCCCAATTCCATCCCTCCACGCCACGATCGCCTTCCGCAAGgtaaccgccc ... tactatgcagGTTTCTTCTTCAGTGCACATGTGAAACTGTACTTCACCTCCCATATATAAT
EST: TCCCTCTCCCCCCAATTCCATCCCTCCACGCCACGATCGCCTTCCGCAAG GTTTCTTCTTCAGTGCACATGTGAAACTGTACTTCACCTCCCATATATAAT
genomic: TCCCTCTCCCCCCAATTCCATCCCTCCACGCCACGATCGCCTTCCGCAAGgtaaccgccc ... tactatgcagGTTTCTTCTTCAGTGCACATGTGAAACTGTACTTCACCTCCCATATATAAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCCGCCGCCCACGCCGACGCGAGGAGCACTCGCCGCCCGCCACCGCGCTCTCCCTCTCCCCCCAATTCCATCCCTCCACGCCACGATCGCCTTCCGCAAGgtaaccgccctcccctcgccgccgcggctcggagcttgcatgcatgcacgcatcatcatcatcggctcatcgcagatgtagggtagggacggtggtaagt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccctccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gccgcgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gggacgg