1 5' 3' | 2 5' 3' | 3 5' 3' |
GTGCGCCGCCGTATGCCGGACATGGAGGGACATGTGTAGAGAGATCGTCAAGAACCCCGAGTTTTGCGGGAAGATCACTTTTCCTGTTTCCCTCAAGCAGgtgatgatgatgctctcttgcttagtcttgtatttccgcgcttcgatttcagatttgtttaactaacatacatctttgatggttgtcgtatacacggcttaatatgctcatttatagtatgcgaaatgaaattctgatatagaaatatttgatatgttcattaatatgcttttcttgaccatgttttgtttttcag
species | Oryza sativa |
transcript | LOC_Os12g06630.2 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: AGAACCCCGAGTTTTGCGGGAAGATCACTTTTCCTGTTTCCCTCAAGCAG CCTGGGCCCCGGGATGGAGCCATCCAGTGCTTCATTAAAAGGGATAAATCTEST: gi|33810127|gb|CF330953.1|CF330953
genomic: AGAACCCCGAGTTTTGCGGGAAGATCACTTTTCCTGTTTCCCTCAAGCAGgtgatgatga ... tgtttttcagCCTGGGCCCCGGAATGGAGCCATCCAGTGCTTCATTAAAAGGGATAAATCT
EST: GTTTTGCGGGAAGATCACTTTTCCTGTTTCCCTCAAGCAG CCTGGGCCCCGGAATGGAGCCATCCAGTGCTTCATTAAAAGGGATAAATCTEST: gi|58672719|gb|CK061405.1|CK061405
genomic: GTTTTGCGGGAAGATCACTTTTCCTGTTTCCCTCAAGCAGgtgatgatga ... tgtttttcagCCTGGGCCCCGGAATGGAGCCATCCAGTGCTTCATTAAAAGGGATAAATCT
EST: GCGGGAAGATCACTTTTCCTGTTTCCCTCAAGCAG CCTGGGCCCCGGGATGGAGCCATCCAGTGCTTCATTAAAAGGGATAAATCTEST: gi|58656494|gb|CK045174.1|CK045174
genomic: GCGGGAAGATCACTTTTCCTGTTTCCCTCAAGCAGgtgatgatga ... tgtttttcagCCTGGGCCCCGGAATGGAGCCATCCAGTGCTTCATTAAAAGGGATAAATCT
EST: AGAACCCCGAGTTTTGCGGGAAGATCACTTTTCCTGTTTCCCTCAAGCAG CCTGGGCCCCGGCGATGGAGCCATCCAGTGCTTCATTAAAAGGGATAAATCEST: gi|11170889|gb|AU163519.1|AU163519
genomic: AGAACCCCGAGTTTTGCGGGAAGATCACTTTTCCTGTTTCCCTCAAGCAGgtgatgatga ... tgtttttcagCCTGGGCCCCGGA-ATGGAGCCATCCAGTGCTTCATTAAAAGGGATAAATC
EST: AGAACCCCGAGTTTTGCGGGAAGATCACTTTTCCTGTTTCCCTCAAGCAG CCTGGGCCCCGGAATGGAGCCATCCAGTGCTTCATTAAAAGGGATAAATCT
genomic: AGAACCCCGAGTTTTGCGGGAAGATCACTTTTCCTGTTTCCCTCAAGCAGgtgatgatga ... tgtttttcagCCTGGGCCCCGGAATGGAGCCATCCAGTGCTTCATTAAAAGGGATAAATCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGCGCCGCCGTATGCCGGACATGGAGGGACATGTGTAGAGAGATCGTCAAGAACCCCGAGTTTTGCGGGAAGATCACTTTTCCTGTTTCCCTCAAGCAGgtgatgatgatgctctcttgcttagtcttgtatttccgcgcttcgatttcagatttgtttaactaacatacatctttgatggttgtcgtatacacggcttaatatgctcatttatagtatgcgaaatgaaattctgatatagaaatatttgatatgttcattaatatgcttttcttgaccatgttttgtttttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA