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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAGGAAGATAGCCAGCATGTCGAATTTGAACGTGAGGAAATGGATGATTCTGATGAGGACCAAGTTCAAGGTGTCGACCCCTTGCTGGCTCAAAACAAGgtaatattgcagtttagcacatatctgttattctagtatcattttactgttcatttctggatgtagaattctactgatttccccattctctagaatgatt...

Basic information

species Oryza sativa
transcript LOC_Os12g05720.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os12g05720.1 (Oryza sativa), 5'ss of exon 1
lower sequence: GRMZM2G035451_T01 (Zea mays), 5'ss of exon 1
AGAGGAAGATAGCCAGCATGTCGAATTTGAACGTGAGGAAATGGATGATTCTGATGAGGACCAAGTTCAAGGTGTCGACCCCTTGCTGGCTCAAAACAAGgtaatatt-gcagtttagcac--atatctgttattctagtatcattttactgttcatttctggatgtagaattctactgatttccccattctctagaatgatt
 |||||||||||||||||||| || |||||| |||||||||||||||||||||| ||||| |||||||| |||   ||  |||  |    |||||| ||||| || || | || |  ||    ||  |||||| | | | ||  | |||   ||  ||  |   |  | ||| | |     ||    |   | ||   |  | 
TGAGGAAGATAGCCAGCATGTTGAGTTTGAATGTGAGGAAATGGATGATTCTGAAGAGGAGCAAGTTCAGGGTCCAGAAGCCTCTCCAATTCAAAATAAGgtgatgtttgtagatatgcctcaatgcctgttagtatggcattgtattatgatttgttcat---taaaaaatgccatgacattggaaaagatgtatttttctg