1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GCCTCCAAATCCGCGGACCAGCCGCCTGCCCGCCGTCCCGCACCGATGGCCGTGCTGGAAGAAGATCCGGCCCCGGTACCCGCCGCCGATTCTACCTCCGgtgagtgagtctcccgctttctctcgcactccctacaccctgggggcgtgtctgtcttgtgtttggtgtggtgagttggatcggttggttcggcaggctg...
species | Oryza sativa |
transcript | LOC_Os12g05090.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CGTGCTGGAAGAAGATCCGGCCCCGGTACCCGCCGCCGATTCTACCTCCG GTGCTAGCGATGATGAGATAACAGTGGAAGAAACTTCCTTTGTGCATACTGEST: gi|88367201|gb|CI563965.1|CI563965
genomic: CGTGCTGGAAGAAGATCCGGCCCCGGTACCCGCCGCCGATTCTACCTCCGgtgagtgagt ... ggttgtttagGTGCTAGCGATGATGAGATAACAGTGGAAGAAACTTCCTTTGTGCATACTG
EST: CGTGCTGGAAGAAGATCCGGCCCCGGTACCCGCCGCCGATTCTACCTCCG GTGCTAGCGATGATGAGATAACAGTGGAAGAAACTTCCTTTGTGCATACTGEST: gi|86885596|gb|CI311801.1|CI311801
genomic: CGTGCTGGAAGAAGATCCGGCCCCGGTACCCGCCGCCGATTCTACCTCCGgtgagtgagt ... ggttgtttagGTGCTAGCGATGATGAGATAACAGTGGAAGAAACTTCCTTTGTGCATACTG
EST: CGTGCTGGAAGAAGATCCGGCCCCGGTACCCGCCGCCGATTCTACCTCCG GTGCTAGCGATGATGAGATAACAGTGGAAGAAACTTCCTTTGTGCATACTG
genomic: CGTGCTGGAAGAAGATCCGGCCCCGGTACCCGCCGCCGATTCTACCTCCGgtgagtgagt ... ggttgtttagGTGCTAGCGATGATGAGATAACAGTGGAAGAAACTTCCTTTGTGCATACTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCCTCCAAATCCGCGGACCAGCCGCCTGCCCGCCGTCCCGCACCGATGGCCGTGCTGGAAGAAGATCCGGCCCCGGTACCCGCCGCCGATTCTACCTCCGgtgagtgagtctcccgctttctctcgcactccctacaccctgggggcgtgtctgtcttgtgtttggtgtggtgagttggatcggttggttcggcaggctg
- - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctcccgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cactccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gggggcg