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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAGCGGCGGCTGCGCGCCGTCTCCGGCCACCTCCAGCCGCCGACGGAGTCCGGCGGCGTTGACCTCGCCGCCAACCCCACCGCCGGCGAGTACGCGCACGgtacgtacgatcgatcgatcgatcgtctattcgtctgcactactacttgctacttactagtgatgtggtatgcatttgtgattttatccatcccgtgcat...

Basic information

species Oryza sativa
transcript LOC_Os12g04990.3
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88307649|gb|CI644685.1|CI644685
EST:     CGGCGGCGTTGACCTCGCCGCCAACCCCACCGCCGGCGAGTACGCGCACG                         TGCAGGGCTACAGTGCTGTACTCCCTGAGAAGTGGCAAACTGGAAAGTGGA
genomic: CGGCGGCGTTGACCTCGCCGCCAACCCCACCGCCGGCGAGTACGCGCACGgtacgtacga ... gcttctccagTGCAGGGCTACAGTGCTGTACTCCCTGAGAAGTTGCAAACTGGAAAGTGGA
EST: gi|33675569|gb|CF303808.1|CF303808
EST:     CACCGACGGCCAGTACGCGCACG                         TGCAGGGCTACAGTGCTGTACTCCCTGAGAAGTTGCAAACTGGAAAGTGGA
genomic: CACCGCCGGCGAGTACGCGCACGgtacgtacga ... gcttctccagTGCAGGGCTACAGTGCTGTACTCCCTGAGAAGTTGCAAACTGGAAAGTGGA
EST: gi|88294822|gb|CI604694.1|CI604694
EST:     CGGCGGCGTTGACCTCGCCGCCAACCCCACCGCCGGCGAGTACGCGCACG                         TGCAGGGCTACAGTGCTGTACTCCCTGAGAAGTTGCAAACTGGAAAGTGGA
genomic: CGGCGGCGTTGACCTCGCCGCCAACCCCACCGCCGGCGAGTACGCGCACGgtacgtacga ... gcttctccagTGCAGGGCTACAGTGCTGTACTCCCTGAGAAGTTGCAAACTGGAAAGTGGA
EST: gi|87009029|gb|CI304972.1|CI304972
EST:     CGGCGGCGTTGACCTCGCCGCCAACCCCACCGCCGGCGAGTACGCGCACG                         TGCAGGGCTACAGTGCTGTACTCCCTGAGAAGTTGCAAACTGGAAAGTGGA
genomic: CGGCGGCGTTGACCTCGCCGCCAACCCCACCGCCGGCGAGTACGCGCACGgtacgtacga ... gcttctccagTGCAGGGCTACAGTGCTGTACTCCCTGAGAAGTTGCAAACTGGAAAGTGGA
EST: gi|88574980|gb|CI666749.1|CI666749
EST:     CGGCGGCGTTGACCTCGCCGCCAACCCCACCGCCGGCGAGTACGCGCACG                         TGCAGGGCTACAGTGCTGTACTCCCTGAGAAGTTGCAAACTGGAAAGTGGA
genomic: CGGCGGCGTTGACCTCGCCGCCAACCCCACCGCCGGCGAGTACGCGCACGgtacgtacga ... gcttctccagTGCAGGGCTACAGTGCTGTACTCCCTGAGAAGTTGCAAACTGGAAAGTGGA
EST: gi|88307728|gb|CI644768.1|CI644768
EST:     CGGCGGCGTTGACCTCGCCGCCAACCCCACCGCCGGCGAGTACGCGCACG                         TGCAGGGCTACAGTGCTGTACTCCCTGAGAAGTTGCAAACTGGAAAGTGGA
genomic: CGGCGGCGTTGACCTCGCCGCCAACCCCACCGCCGGCGAGTACGCGCACGgtacgtacga ... gcttctccagTGCAGGGCTACAGTGCTGTACTCCCTGAGAAGTTGCAAACTGGAAAGTGGA