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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATTGCCTTGTTATTTGCTGCAAACTTGGTGTCAGCTCAGCTTAGCGCAAATTTCTATGACAAATCATGCCCTAATGCACTGCCCACCATCCGAATAGCCgtgagatctgccatcgcaagggagaaccgcatgggtgcatcattgctccgcctccacttccacgactgctttgtcaatgaaagtgtcctgaacctgcagagatattcaaaattttctcacttctaagtattacgtaataaccttcagtattctgacaatgcag

Basic information

species Oryza sativa
transcript LOC_Os12g02060.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os12g02060.1 (Oryza sativa), 5'ss of exon 1
lower sequence: GLYMA02G40000.1 (Glycine max), 5'ss of exon 1
CATTGCCTTGTTATTTGCTGCAAACTTGGTGTCAGCTCAGCTTAGCGCAAATTTCTATGACAAATCATGCCCTAATGCACTGCCCACCATCCGAATAGCCgtgagatctgccatcgcaagggagaaccgcatgggtgcatcattgctccgcctccacttccacgactgctttgtcaatgaaagtgtcctgaacctgcagagatattcaaaattttctcacttctaagta---ttacgtaataacct--tcagtattctgacaatgcag-----------
                                                                               ||  | | ||||  ||  || ||||    |||  | || |  ||| |||||||||| || || |||||||| || || ||||| |||||||||||||||| | || | ||        |    ||     |  |||||||||   || ||   | | | |   |  |  | |   |||  |||||               
------------------------------------------------------------------------------TCTCTCTATCATCAAAACGGCGGTGATTGGTGCGGTTGCGAAAGAGCACCGCATGGGAGCCTCCTTGCTCCGTCTTCATTTCCATGACTGCTTTGTCAATgcacgttttcttttaacatatcc-tagcttcacctttctcactgtcaattaatctcatgcatatatgtgattaaatttcgaacaataatatatattggcat

upper sequence: LOC_Os12g02060.1 (Oryza sativa), 5'ss of exon 1
lower sequence: Vv18s0001g06840.t01 (Vitis vinifera), 5'ss of exon 1
CATTGCCTTGTTATTTGCTGCAAACTTGGTGTCAGCTCAGCTTAGCGCAAATTTCTATGACAAATCATGCCCTAATGCACTGCCCACCATCCGAATAGCCgtgagatctgccatcgcaagggagaaccgcatgggtgcatcattgctccgcctccacttccacgactgctttgtcaatgaaagt-gtcctgaacctgc----------agagatattcaaaattttctcacttct--aagtattacgtaataacc-ttcagtattctgacaatgcag-
                                                                               || || ||||| ||||  || || |     ||  | || |  ||||| |||||||| || ||||||||||||||||| ||||| || ||||| ||    | |||| || ||  || | |          |  ||| |||    |||    |||| |  || | ||   |  | ||   | | |       |||   || 
------------------------------------------------------------------------------TCTCCCTACCATTCGAACTGCAGTAAACAAAGCAGTGGCCAAAGAGAAACGCATGGGGGCCTCATTGCTCCGCCTCCATTTCCATGATTGCTTCGTATTGgcaagtcgttctccacattcctcctttttaatggatcttctgtttttcactacttttttaacttttttctggttactactgactgcctctgcaacttagg