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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTGGTATGGAAATCCTCACCATCGCCTTGCCTGCTGTGCTCGCCCTCGCCGCCGACCCCATCACGGCGCTCATCGACACCGCCTTCGTTGGCCATGTCGgtaaggaccttaattgcttcctcacttactacttgtaattgtcccttcattctatacaaatctacatttaccgcacaagaaaaattatatccccttttgg...

Basic information

species Oryza sativa
transcript LOC_Os12g01580.2
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os12g01580.1 (Oryza sativa), 5'ss of exon 1
lower sequence: GRMZM5G890665_T02 (Zea mays), 5'ss of exon 1
ATTGGTATGGAAATCCTCACCATCGCCTTGCCTGCTGTGCTCGCCCTCGCCGCCGACCCCATCACGGCGCTCATCGACACCGCCTTCGTTGGCCATGTCGgtaaggaccttaattgcttcctcacttactacttgtaattgtcccttcattctatacaaatctacatttaccgcacaagaaaaattatatccccttttgg---
 |||    ||| |||||| ||||||||  |||||| |||||||| |||||||| |||||||||||||||||| ||||||| |||||||| || ||| |||||||   ||   | |     ||   | |     || | || ||| ||      |||  ||||  |   ||||   |        |  | | ||  |       
GTTGCAGCGGACATCCTCGCCATCGCCGCGCCTGCCGTGCTCGCGCTCGCCGCGGACCCCATCACGGCGCTCGTCGACACTGCCTTCGTCGGGCATATCGgtaa--cccagtactctgagctttgtaatccagtgcatttatccatttcaaacata-gaatcatcccataccttgctcagctcttactctgccactgcaatgt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29639600|gb|CB644609.1|CB644609
EST:     CGCCGACCCCATCACGGCGCTCATCGACACCGCCTTCGTTGGCCATGTCG                         GTTCAACTGAACTTGCTGCCGTTGGAGTATCCATTTCTATCTTCAATTTGG
genomic: CGCCGACCCCATCACGGCGCTCATCGACACCGCCTTCGTTGGCCATGTCGgtaaggacct ... cattcaccagGTTCAACTGAACTTGCTGCCGTTGGAGTATCCATTTCTATCTTCAATTTGG
EST: gi|88425832|gb|CI571732.1|CI571732
EST:     CGCCGACCCCATCACGGCGCTCATCGACACCGCCTTCGTTGGGCATGTCG                         GTTCAAGTGAA
genomic: CGCCGACCCCATCACGGCGCTCATCGACACCGCCTTCGTTGGCCATGTCGgtaaggacct ... cattcaccagGTTCAACTGAA
EST: gi|117243617|gb|CT843150.1|CT843150
EST:     CGCCGACCCCATCACGGCGCTCATCGACACCGCCTTCGTTGGCCATGTCG                         GTTCGACTGAACTTGCTGCCGTTGGAGTATCCATTTCTATCTTCAATTTGG
genomic: CGCCGACCCCATCACGGCGCTCATCGACACCGCCTTCGTTGGCCATGTCGgtaaggacct ... cattcaccagGTTCAACTGAACTTGCTGCCGTTGGAGTATCCATTTCTATCTTCAATTTGG