1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GCATACCGGCCAAGAGAAGAGAGCCAGGAGAAATGCCAAACTGGAAGTTACTACTCCTACTACTATAGAGTGGATTGGAATTGGATTCCTCTCTTTACAGgtaccatccttggcttttttttcttgtcgatttcctttgtaactacctctgtacacttttggtacttgcaaaacagatttatgacagtgtccggttccttgtttgctcagttcattcgactctttgcataatactctcttgtttcacttatttaccatttcttttttgtaattcttaag
species | Oryza sativa |
transcript | LOC_Os12g01510.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CTACTCCTACTACTATAGAGTGGATTGGAATTGGATTCCTCTCTTTACAG ATCAAGATTTCAATCTTTGAGGGAAGACGATGCTTCTTTACATGGTAATACEST: gi|88582664|gb|CI700087.1|CI700087
genomic: CTACTCCTACTACTATAGAGTGGATTGGAATTGGATTCCTCTCTTTACAGgtaccatcct ... aattcttaagATCAAGATTTCAATCTTTGAGGGAAGACGATGCTTCTTTACATGGTAATAC
EST: CTACTCCTACTACTATAGAGTGGATTGGAATTGGATTCCTCTCTTTACAG ATCAAGATTTCAATCTTTGAGGGAAGACGATGCTTCTTTACATGGTAATACEST: gi|33799551|gb|CF325636.1|CF325636
genomic: CTACTCCTACTACTATAGAGTGGATTGGAATTGGATTCCTCTCTTTACAGgtaccatcct ... aattcttaagATCAAGATTTCAATCTTTGAGGGAAGACGATGCTTCTTTACATGGTAATAC
EST: CTACTCCTACTACTATAGAGTGGATTGGAATTGGATTCCTCTCTTTACAG ATCAAGATTTCAATCTTTGAGGGAAGACGATGCTTCTTTACATGGTAATACEST: gi|117240478|gb|CT842829.1|CT842829
genomic: CTACTCCTACTACTATAGAGTGGATTGGAATTGGATTCCTCTCTTTACAGgtaccatcct ... aattcttaagATCAAGATTTCAATCTTTGAGGGAAGACGATGCTTCTTTACATGGTAATAC
EST: CTACTCCTACTACTATAGAGTGGATTGGAATTGGATTCCTCTCTTTACAG ATCAAGATTTCAATTTTTGAGGGAAGACGATGCTTCTTTACATGGTAATACEST: gi|88593154|gb|CI711312.1|CI711312
genomic: CTACTCCTACTACTATAGAGTGGATTGGAATTGGATTCCTCTCTTTACAGgtaccatcct ... aattcttaagATCAAGATTTCAATCTTTGAGGGAAGACGATGCTTCTTTACATGGTAATAC
EST: CTACTCCTACTACTATAGAGTGGATTGGAATTGGATTCCTCTCTTTACAG ATCAAGATTTCAATCTTTGAGGGAAGACGATGCTTCTTTACATGGTAATACEST: gi|58607612|gb|CK035645.1|CK035645
genomic: CTACTCCTACTACTATAGAGTGGATTGGAATTGGATTCCTCTCTTTACAGgtaccatcct ... aattcttaagATCAAGATTTCAATCTTTGAGGGAAGACGATGCTTCTTTACATGGTAATAC
EST: CTACTCCTACTACTATAGAGTGGATTGGAATTGGATTCCTCTCTTTACAG ATCAAGATTTCAATTTTTGAGGGAAGACGATGCTTCTTTACATGGTAATAC
genomic: CTACTCCTACTACTATAGAGTGGATTGGAATTGGATTCCTCTCTTTACAGgtaccatcct ... aattcttaagATCAAGATTTCAATCTTTGAGGGAAGACGATGCTTCTTTACATGGTAATAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCATACCGGCCAAGAGAAGAGAGCCAGGAGAAATGCCAAACTGGAAGTTACTACTCCTACTACTATAGAGTGGATTGGAATTGGATTCCTCTCTTTACAGgtaccatccttggcttttttttcttgtcgatttcctttgtaactacctctgtacacttttggtacttgcaaaacagatttatgacagtgtccggttccttgtttgctcagttcattcgactctttgcataatactctcttgtttcacttatttaccatttcttttttgtaattcttaag
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