1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
ATGCCGTCGAGCACTACGCTAATGCCTATGTCTTCACCTACGATAACATGAGGAATCAGAAGCTCAAGGACCTCAGAGAGCAGCTCAAGTCCTCCAGCAGgtagctgcctcttattattattagtattactagtctagccagtactgtgcctctctgctcaaagcatcaaacgatatgctgcatagattgaattttcgct...
species | Oryza sativa |
transcript | LOC_Os12g01430.2 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: AGGAATCAGAAGCTCAAGGACCTCAGAGAGCAGCTCAAGTCCTCCAGCAG GATATTCCTTGCTGGAAAGAAGGTCATGCAGATAGCGTTGGGGCGTTCACCEST: gi|218485998|gb|FG965622.1|FG965622
genomic: AGGAATCAGAAGCTCAAGGACCTCAGAGAGCAGCTCAAGTCCTCCAGCAGgtagctgcct ... tttatgtcagGATATTCCTTGCTGGAAAGAAGGTCATGCAGATAGCGTTGGGGCGTTCACC
EST: AGGAATCAGAAGCTCAAGGACCTCAGAGAGCAGCTCAAGTCCTCCAGCAG GATATTCCTTGCTGGAAAGAAGGTCATGCAGATAGCGCTGGGGCGTTCACCEST: gi|163918505|gb|EG711435.1|EG711435
genomic: AGGAATCAGAAGCTCAAGGACCTCAGAGAGCAGCTCAAGTCCTCCAGCAGgtagctgcct ... tttatgtcagGATATTCCTTGCTGGAAAGAAGGTCATGCAGATAGCGTTGGGGCGTTCACC
EST: AGGAATCAGAAGCTCAAGGACCTCAGAGAGCAGCTCAAGTCCTCCAGCAG GATATTCCTTGCTGGAAAGAAGGTCATGCAGATAGCGTTGGGGCGTTCACC
genomic: AGGAATCAGAAGCTCAAGGACCTCAGAGAGCAGCTCAAGTCCTCCAGCAGgtagctgcct ... tttatgtcagGATATTCCTTGCTGGAAAGAAGGTCATGCAGATAGCGTTGGGGCGTTCACC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATGCCGTCGAGCACTACGCTAATGCCTATGTCTTCACCTACGATAACATGAGGAATCAGAAGCTCAAGGACCTCAGAGAGCAGCTCAAGTCCTCCAGCAGgtagctgcctcttattattattagtattactagtctagccagtactgtgcctctctgctcaaagcatcaaacgatatgctgcatagattgaattttcgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA