1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
GGTGGGGATGTTCGTGGCGCTCATCTGCGTCTGCATCGTCGTCGGCCACCTCCTCGAGGAGAGCCGATGGATGAACGAGTCCATCACCGCGCTAATCATCgtgagtcgatgagttcttgttgagttgtgctgtttattatgtgagattttgggagatgatggtggttttcgtttggtgtttgattgtttgtggtgtgtgtgtctggggtttcttgcag
species | Oryza sativa |
transcript | LOC_Os11g42790.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TCCTCGAGGAGAGCCGATGGATGAACGAGTCCATCACCGCGCTAATCATC GGGTTGGGTACTGGAGGAGTGATTTTGATGGTGTCGAGCTGGAAGCACTCGEST: gi|88363386|gb|CI643244.1|CI643244
genomic: TCCTCGAGGAGAGCCGATGGATGAACGAGTCCATCACCGCGCTAATCATCgtgagtcgat ... tttcttgcagGGGTTGGGTACTGGAGGAGTGATTTTGATGGTGTCGAGCTGGAAGCACTCG
EST: TCCTCGAGGAGAGCCGATGGATGAACGAGTCCATCACCGCGCTAATCATC GGGTTGGGTACTGGAGGAGTGATTTTGATGGTGTCGAGCTGGAAGCACTCGEST: gi|88851589|gb|CI671029.1|CI671029
genomic: TCCTCGAGGAGAGCCGATGGATGAACGAGTCCATCACCGCGCTAATCATCgtgagtcgat ... tttcttgcagGGGTTGGGTACTGGAGGAGTGATTTTGATGGTGTCGAGCTGGAAGCACTCG
EST: TCCTCGAGGAGAGCCGATGGATGAACGAGTCCATCACCGCGCTAATCATC GGGTTGGGTACTGGAGGAGTGATTTTGATGGTGTCGAGCTGGAAGCACTCGEST: gi|29631041|gb|CB636050.1|CB636050
genomic: TCCTCGAGGAGAGCCGATGGATGAACGAGTCCATCACCGCGCTAATCATCgtgagtcgat ... tttcttgcagGGGTTGGGTACTGGAGGAGTGATTTTGATGGTGTCGAGCTGGAAGCACTCG
EST: AACGAGTCCATCACCGCGCTAATCATC GGGTTGGGTACTGGAGGAGTGATTTTGATGGTGTCGAGCTGGAAGCACTCGEST: gi|88431579|gb|CI576770.1|CI576770
genomic: AACGAGTCCATCACCGCGCTAATCATCgtgagtcgat ... tttcttgcagGGGTTGGGTACTGGAGGAGTGATTTTGATGGTGTCGAGCTGGAAGCACTCG
EST: TCCTCGAGGAGAGCCGATGGATGAACGAGTCCATCACCGCGCTAATCATC GGGTTGGGTACTGGAGGAGTGGTTTTGATGGTGTCGAGCTGGAAGCACTCGEST: gi|88331785|gb|CI640816.1|CI640816
genomic: TCCTCGAGGAGAGCCGATGGATGAACGAGTCCATCACCGCGCTAATCATCgtgagtcgat ... tttcttgcagGGGTTGGGTACTGGAGGAGTGATTTTGATGGTGTCGAGCTGGAAGCACTCG
EST: TCCTCGAGGAGAGCCGATGGATGAACGAGTCCATCACCGCGCTAATCATC GGGTTGGGTACTGGAGGAGTGATTTTGATGGTGTCGAGCTGGAAGCACTCGEST: gi|88330720|gb|CI636725.1|CI636725
genomic: TCCTCGAGGAGAGCCGATGGATGAACGAGTCCATCACCGCGCTAATCATCgtgagtcgat ... tttcttgcagGGGTTGGGTACTGGAGGAGTGATTTTGATGGTGTCGAGCTGGAAGCACTCG
EST: TCCTCGAGGAGAGCCGATGGATGAACGAGTCCATCACCGCGCTAATCATC GGGTTGGGTACTGGAGGAGTGATTTTGATGGTGTCGAGCTGGAAGCACTCG
genomic: TCCTCGAGGAGAGCCGATGGATGAACGAGTCCATCACCGCGCTAATCATCgtgagtcgat ... tttcttgcagGGGTTGGGTACTGGAGGAGTGATTTTGATGGTGTCGAGCTGGAAGCACTCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGTGGGGATGTTCGTGGCGCTCATCTGCGTCTGCATCGTCGTCGGCCACCTCCTCGAGGAGAGCCGATGGATGAACGAGTCCATCACCGCGCTAATCATCgtgagtcgatgagttcttgttgagttgtgctgtttattatgtgagattttgggagatgatggtggttttcgtttggtgtttgattgtttgtggtgtgtgtgtctggggtttcttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA