1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
TCTTCTCTCTCTACTACTTCTCCTCCTCCTCCTTCCTCGCCGATCCTCGCCGCCGCCGCCGCGCATCGCCGGAGCAATCTCCATTGACAAGAGCGgtaagtagagtatctctagcttctgcttgggttggattctcctcccaattcccatatattcgcttattatgtggaaaaggctttgggaagaagaagaaga...
species | Oryza sativa |
transcript | LOC_Os11g36070.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TCGCCGCCGCC-CTTGCGCATCGCCGGAGCAATCTCCATTGACAAGAGCG GTATAGGTTGGTGAGGAGGGGAGCTAGAGCTTGATGGTGGCGGCCATGGAGEST: gi|58609633|gb|CK037666.1|CK037666
genomic: TCGCCGCCGCCGC-CGCGCATCGCCGGAGCAATCTCCATTGACAAGAGCGgtaagtagag ... gtgaatgaagGTATAGGTTGGTGAGGAGGGGAGCTAGAGCTTGATGGTGGCGGCCATGGAG
EST: CTCGCCGCCG-CGCCGCGCATCGCCGGAGCAATCTCCA-TGACAAGAGCG G----GG--GGTGAGGAGGGGAGCTAGAGC-TGATGGTGGCGGCCA-GGAGEST: gi|29626153|gb|CB631164.1|CB631164
genomic: CTCGCCGCCGCCGCCGCGCATCGCCGGAGCAATCTCCATTGACAAGAGCGgtaagtagag ... gtgaatgaagGTATAGGTTGGTGAGGAGGGGAGCTAGAGCTTGATGGTGGCGGCCATGGAG
EST: CTCGCCGCCGCCGCCGCGCATCGCCGGAGCAATCTCCATTGACAAGAGCG GTATAGGTTGGTGAGGAGGGGAGCTAGAGCTTGATGGTGGCGGCCATGGAGEST: gi|88692480|gb|CI736055.1|CI736055
genomic: CTCGCCGCCGCCGCCGCGCATCGCCGGAGCAATCTCCATTGACAAGAGCGgtaagtagag ... gtgaatgaagGTATAGGTTGGTGAGGAGGGGAGCTAGAGCTTGATGGTGGCGGCCATGGAG
EST: GCCGCCGCCGCGCATCGCCGGAGCAATCTCCATTGACAAGAGCG GTATAGGTTGGTGAGGAGGGGAGCTAGAGCTTGATGGTGGCGGCCATGGAGEST: gi|29623258|gb|CB628269.1|CB628269
genomic: GCCGCCGCCGCGCATCGCCGGAGCAATCTCCATTGACAAGAGCGgtaagtagag ... gtgaatgaagGTATAGGTTGGTGAGGAGGGGAGCTAGAGCTTGATGGTGGCGGCCATGGAG
EST: CTCGCCGCCGCCGCCGCGCATCGCCGGAGCAATCTCCATTGACAAGAGCG GTATAGGTTGGTGAGGAGGGGAGCTAGAGCTTGATGGTGGCGGCCATGGAGEST: gi|29626975|gb|CB631986.1|CB631986
genomic: CTCGCCGCCGCCGCCGCGCATCGCCGGAGCAATCTCCATTGACAAGAGCGgtaagtagag ... gtgaatgaagGTATAGGTTGGTGAGGAGGGGAGCTAGAGCTTGATGGTGGCGGCCATGGAG
EST: CCGCCGCCGCGCACTCGCCGGAGCAATCTCCATTGACAAGAGCG GTATAGGTTGGTGAGGAGGGGAGCTAGAGCTTGATGGTGGCGGCCATGGAGEST: gi|29623293|gb|CB628304.1|CB628304
genomic: CCGCCGCCGCGCA-TCGCCGGAGCAATCTCCATTGACAAGAGCGgtaagtagag ... gtgaatgaagGTATAGGTTGGTGAGGAGGGGAGCTAGAGCTTGATGGTGGCGGCCATGGAG
EST: CTCGCCGCCGCCGCCGCGCATCGCCGGAGCAATCTCCATTGACAAGAGCG GTATAGGTTGGTGAGGAGGGGAGCTAGAGCTTGATGGTGGCGGCCATGGAG
genomic: CTCGCCGCCGCCGCCGCGCATCGCCGGAGCAATCTCCATTGACAAGAGCGgtaagtagag ... gtgaatgaagGTATAGGTTGGTGAGGAGGGGAGCTAGAGCTTGATGGTGGCGGCCATGGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCTTCTCTCTCTACTACTTCTCCTCCTCCTCCTTCCTCGCCGATCCTCGCCGCCGCCGCCGCGCATCGCCGGAGCAATCTCCATTGACAAGAGCGgtaagtagagtatctctagcttctgcttgggttggattctcctcccaattcccatatattcgcttattatgtggaaaaggctttgggaagaagaagaaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA