1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' |
GCGGCAAGCCGTCGGCCGGGCCAGTCTACCGGAGCATCTACTCCAAGGATGGCCTCATGAAGCTCCCTGAAGATATCCTGTCCCCTTGGGACTTCTTCAGgttggtttcttggcatggtgccggtcaatttgacaatgcattattcaatttgctttcatcaagattgtgctaattttctagtgagaagcttgtatttcag...
species | Oryza sativa |
transcript | LOC_Os11g35400.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GGCCTCATGAAGCTCCCTGAAGATATCCTGTCCCCTTGGGACTTCTTCAG TGGAGCAGTCAAGCAGTACCCCAAGAACAAGATGCTGGGCCAGCGCAAAGTEST: gi|88692791|gb|CI736366.1|CI736366
genomic: GGCCTCATGAAGCTCCCTGAAGATATCCTGTCCCCTTGGGACTTCTTCAGgttggtttct ... gttcttgaagTGGAGCAGTCAAGCAGTACCCCAAGAACAAGATGCTGGGCCAGCGCAAAGT
EST: GGCCTCATGAAGCTCCCTGAAGATATCCTGTCCCCTTGGGACTTCTTCAG TGGAGCAGTCAAGCAGTACCCCAAGAACAAGATGCTGGGCCAGCGCAAAGTEST: gi|58667264|gb|CK055950.1|CK055950
genomic: GGCCTCATGAAGCTCCCTGAAGATATCCTGTCCCCTTGGGACTTCTTCAGgttggtttct ... gttcttgaagTGGAGCAGTCAAGCAGTACCCCAAGAACAAGATGCTGGGCCAGCGCAAAGT
EST: GGCCTCATGAAGCTCCCTGAAGATATCCTGTCCCCTTGGGACTTCTTCAG TGGAGCAGTCAAGCAGTACCCCAAGAACAAGATGCTGGGCCAGCGCAAAGTEST: gi|58669433|gb|CK058119.1|CK058119
genomic: GGCCTCATGAAGCTCCCTGAAGATATCCTGTCCCCTTGGGACTTCTTCAGgttggtttct ... gttcttgaagTGGAGCAGTCAAGCAGTACCCCAAGAACAAGATGCTGGGCCAGCGCAAAGT
EST: GGCCTCATGAAGCTCCCTGAAGATATCCTGTCCCCTTGGGACTTCTTCAG TGGAGCAGTCAAGCAGTACCCCAAGAACAAGATGCTGGGCCAGCGCAAAGTEST: gi|58668117|gb|CK056803.1|CK056803
genomic: GGCCTCATGAAGCTCCCTGAAGATATCCTGTCCCCTTGGGACTTCTTCAGgttggtttct ... gttcttgaagTGGAGCAGTCAAGCAGTACCCCAAGAACAAGATGCTGGGCCAGCGCAAAGT
EST: GGCCTCATGAAGCTCCCTGAAGATATCCTGTCCCCTTGGGACTTCTTCAG TGGAGCAGTCAAGCAGTACCCCAAGAACAAGATGCTGGGCCAGCGCAAAGTEST: gi|88723946|gb|CI745643.1|CI745643
genomic: GGCCTCATGAAGCTCCCTGAAGATATCCTGTCCCCTTGGGACTTCTTCAGgttggtttct ... gttcttgaagTGGAGCAGTCAAGCAGTACCCCAAGAACAAGATGCTGGGCCAGCGCAAAGT
EST: GGCCTCATGAAGCTCCCTGAAGATATCCTGTCCCCTTGGGACTTCTTCAG TGGAGCAGTCAAGCAGTACCCCAAGAACAAGATGCTGGGCCAGCGCAAAGTEST: gi|58666761|gb|CK055447.1|CK055447
genomic: GGCCTCATGAAGCTCCCTGAAGATATCCTGTCCCCTTGGGACTTCTTCAGgttggtttct ... gttcttgaagTGGAGCAGTCAAGCAGTACCCCAAGAACAAGATGCTGGGCCAGCGCAAAGT
EST: GGCCTCATGAAGCTCCCTGAAGATATCCTGTCCCCTTGGGACTTCTTCAG TGGAGCAGTCAAGCAGTACCCCAAGAACAAGATGCTGGGCCAGCGCAAAGTEST: gi|88372098|gb|CI641733.1|CI641733
genomic: GGCCTCATGAAGCTCCCTGAAGATATCCTGTCCCCTTGGGACTTCTTCAGgttggtttct ... gttcttgaagTGGAGCAGTCAAGCAGTACCCCAAGAACAAGATGCTGGGCCAGCGCAAAGT
EST: GGCCTCATGAAGCTCCCTGAAGATATCCTGTCCCCTTGGGACTTCTTCAG TGGAGCAGTCAAGCAGTACCCCAAGAACAAGATGCTGGGCCAGCGCAAAGT
genomic: GGCCTCATGAAGCTCCCTGAAGATATCCTGTCCCCTTGGGACTTCTTCAGgttggtttct ... gttcttgaagTGGAGCAGTCAAGCAGTACCCCAAGAACAAGATGCTGGGCCAGCGCAAAGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCGGCAAGCCGTCGGCCGGGCCAGTCTACCGGAGCATCTACTCCAAGGATGGCCTCATGAAGCTCCCTGAAGATATCCTGTCCCCTTGGGACTTCTTCAGgttggtttcttggcatggtgccggtcaatttgacaatgcattattcaatttgctttcatcaagattgtgctaattttctagtgagaagcttgtatttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA