1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GCCTCCTCGCTCTCTCTCACGCCGGCGAGCAGGGTCTGGAGCCAGGAGCGACGCGGCGGCCGGGGCCGGGGCCTCCATCTCGGTTCGAACCGCACTGAAGgtatccccttcttctcctggcgcgccacttctcgagccggcgtagattggtggatgttcatccgccggggtggggttggacgggattagccccccccccc...
species | Oryza sativa |
transcript | LOC_Os11g34210.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: ACGCGGCGGCCGGGGCCGGGGCCTCCATCTCGGTTCGAACCGCACTGAAG GTCCCTCCCTGCATTAGGGCGCACAATGGCACTGACCCTTCTCAGAGGGATEST: gi|29646031|gb|CB651038.1|CB651038
genomic: ACGCGGCGGCCGGGGCCGGGGCCTCCATCTCGGTTCGAACCGCACTGAAGgtatcccctt ... ggtaaatcagGTCCCTCCCTGCATTAGGGCGCACAATGGCACTGACCCTTCTCAGAGGGAT
EST: ACGCGGCGGCCGGGGCCGGGGCCTCCATCTCGGTTCGAACCGCACTGAAG GTCCCTCCCTGCATTAGGGCGCACAATGGCACTGACCCTTCTCAGAGGGATEST: gi|29641229|gb|CB646236.1|CB646236
genomic: ACGCGGCGGCCGGGGCCGGGGCCTCCATCTCGGTTCGAACCGCACTGAAGgtatcccctt ... ggtaaatcagGTCCCTCCCTGCATTAGGGCGCACAATGGCACTGACCCTTCTCAGAGGGAT
EST: ACGCGGCGGCCGGGGCCGGGGCCTCCATCTCGGTTCGAACCGCACTGAAG GTCCCTCCCTGCATTAGGGCGCACAATGGCACTGACCCTTCTCAGAGGGAT
genomic: ACGCGGCGGCCGGGGCCGGGGCCTCCATCTCGGTTCGAACCGCACTGAAGgtatcccctt ... ggtaaatcagGTCCCTCCCTGCATTAGGGCGCACAATGGCACTGACCCTTCTCAGAGGGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCCTCCTCGCTCTCTCTCACGCCGGCGAGCAGGGTCTGGAGCCAGGAGCGACGCGGCGGCCGGGGCCGGGGCCTCCATCTCGGTTCGAACCGCACTGAAGgtatccccttcttctcctggcgcgccacttctcgagccggcgtagattggtggatgttcatccgccggggtggggttggacgggattagccccccccccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cttctcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gccggcg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gccgggg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggacggg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccccccc