1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
CAAATCCGCGAGCCTCTAGGGTTCGTGGGATCCCCCGGAAATGGATCCGAACCCTAGACTTCTCATCCTACTCGTCCTCCTCGCGTTCTCCGCCACCGTGgtaagaacaagaacccgtgaaagttcagatctttgggcaaaaaatgttgtttttcttggacaaatcttgtgaaaaaagttgctgcttttttttttctgcag
species | Oryza sativa |
transcript | LOC_Os11g28300.2 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: ACCCTAGACTTCTCATCCTACTCGTCCTCCTCGCGTTCTCCGCCACCGTG GCGGTCGCCGAGGACGGCGAATCGACGGGGGGATCGAAGGTCTCGCTGGGGEST: gi|58587682|gb|CF985990.1|CF985990
genomic: ACCCTAGACTTCTCATCCTACTCGTCCTCCTCGCGTTCTCCGCCACCGTGgtaagaacaa ... ttttctgcagGCGGTCGCCGAGGACGGCGAATCGACGGGGGGATCGAAGGTCTCGCTGGGG
EST: ACCCTAGACTTCTCATCCTACTCGTCCTCCTCGCGTTCTCCGCCACCGTG GCGGTCGCCGAGGACGGCGAATCGAEST: gi|88725872|gb|CI747384.1|CI747384
genomic: ACCCTAGACTTCTCATCCTACTCGTCCTCCTCGCGTTCTCCGCCACCGTGgtaagaacaa ... ttttctgcagGCGGTCGCCGAGGACGGCGAATCGA
EST: ACCCTAGACTTCTCATCCTACTCGTCCTCCTCGCGTTCTCCGCCACCGTG GCGGTCGCCGAGGACGGCGAATCGACGGGGGGATCGAAGGTCTCGCTGGGGEST: gi|88731527|gb|CI755140.1|CI755140
genomic: ACCCTAGACTTCTCATCCTACTCGTCCTCCTCGCGTTCTCCGCCACCGTGgtaagaacaa ... ttttctgcagGCGGTCGCCGAGGACGGCGAATCGACGGGGGGATCGAAGGTCTCGCTGGGG
EST: ACCCTAGACTTCTCATCCTACTCGTCCTCCTCGCGTTCTCCGCCACCGTG GCGGTCGCCGAGGACGGCGAATCGACGGGGGGATCGAAGGTCTCGCTGGGG
genomic: ACCCTAGACTTCTCATCCTACTCGTCCTCCTCGCGTTCTCCGCCACCGTGgtaagaacaa ... ttttctgcagGCGGTCGCCGAGGACGGCGAATCGACGGGGGGATCGAAGGTCTCGCTGGGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAAATCCGCGAGCCTCTAGGGTTCGTGGGATCCCCCGGAAATGGATCCGAACCCTAGACTTCTCATCCTACTCGTCCTCCTCGCGTTCTCCGCCACCGTGgtaagaacaagaacccgtgaaagttcagatctttgggcaaaaaatgttgtttttcttggacaaatcttgtgaaaaaagttgctgcttttttttttctgcag
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