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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAGACCACCACCGGTGTCAAGAGGCTCTACCAGATGCAGGAGACCGGCGCCCTCCTCTTCCCCGCCATCAACGTCAACGACTCCGTCACCAAGAGCAAGgtgaagcatcccctccctccctttctaatcccattatatttcagatctgaagctgtttgcgttagcctagcctgctgcttgtactgttcttaccttagta...

Basic information

species Oryza sativa
transcript LOC_Os11g26850.2
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os11g26850.2 (Oryza sativa), 5'ss of exon 1
lower sequence: GRMZM2G015295_T01 (Zea mays), 5'ss of exon 1
GGAGACCACCACCGGTGTCAAGAGGCTCTACCAGATGCAGGAGACCGGCGCCCTCCTCTTCCCCGCCATCAACGTCAACGACTCCGTCACCAAGAGCAAGgtgaagcatcccctccctccctttctaatcccattatatttcagatctgaagctgtt--tgcgttagcctag--cctgctgcttgtactgttcttaccttagta
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||  | | |   || |   | | |    |||||   |||||||||||| | | ||  || ||    ||||  |||||        | ||       ||| | 
GGAGACCACCACGGGTGTCAAGAGGCTCTACCAGATGCAGGAGACCGGCGCCCTCCTCTTCCCTGCCATTAACGTCAACGATTCCGTCACCAAGAGCAAGgtgattcttgcttgcctt---tctttggatccatttcctttcagatctgacgttcttgttgtgtggatctagatcctgcatgactagcagtgtgagatttact-

upper sequence: LOC_Os11g26850.2 (Oryza sativa), 5'ss of exon 1
lower sequence: GRMZM2G111909_T01 (Zea mays), 5'ss of exon 2
GGAGACCACCACCGGTGTCAAGAGGCTCTACCAGATGCAGGAGACCGGCGCCCTCCTCTTCCCCGCCATCAACGTCAACGACTCCGTCACCAAGAGCAAGgtgaagcatcccctccctccctttctaatcccattatatttcagatctgaagctgtt--tgcgttagcctagcctgctgcttg--tactgttcttaccttagta----
                                                  | |||    || | ||||| || |||||||||||||||||||||||||||||||  ||  |   || |       |    |||||   ||||||| |||| | | ||  || ||     |||    |||| ||  ||    ||| |  ||        
----------------------------------------------ACAACTCTCTCTCTCACTGCCATTAATGTCAACGACTCCGTCACCAAGAGCAAGgtgattcaagcgtgcctt-------tggatccatttcctttcagacctgacgtttttgttgtgtggatatagatc-ctgcatgattagcagtctgagatttacgtgtt

upper sequence: LOC_Os11g26850.2 (Oryza sativa), 5'ss of exon 1
lower sequence: GLYMA08G11480.1 (Glycine max), 5'ss of exon 1
GGAGACCACCACCGGTGTCAAGAGGCTCTACCAGATGCAGGAGACCGGCGCCCTCCTCTTCCCCGCCATCAACGTCAACGACTCCGTCACCAAGAGCAAGgtgaagcatcccctccctccctttctaatcccattatatttcagatctgaagctgtttgcgttagcctagcctgctgcttgtactgttcttaccttagta---
||| |||||||| || || ||||||||||| |||||||||| ||  ||  | || |||||||| || || || ||||| ||||| ||||||||||||||||| | |  ||   | || ||   |||| |  | || |  |    |  || ||  | ||| ||| |  |    || |  ||| |  | | ||     | |    
GGAAACCACCACTGGAGTTAAGAGGCTCTATCAGATGCAGGCGAATGGGACTCTTCTCTTCCCTGCTATTAATGTCAATGACTCTGTCACCAAGAGCAAGgtaatgtctctttttcccccagatctagtgtcttttttgtgttaaaatgtag--gattgagttcggatctgttgtt-tttggatgggttttgtgccattggtg

upper sequence: LOC_Os11g26850.2 (Oryza sativa), 5'ss of exon 1
lower sequence: GLYMA11G36620.1 (Glycine max), 5'ss of exon 1
GGAGACCACCACCGGTGTCAAGAGGCTCTACCAGATGCAGGAGACCGGCGCCCTCCTCTTCCCCGCCATCAACGTCAACGACTCCGTCACCAAGAGCAAGgtgaagcatcccctccctccctttctaatcccattatatttcagatctgaagctgtttgcgttagcctagcctgctgcttgtactgttcttaccttagta
 || |||||||||||||||||||||||||||||||||||||  |  ||| ||||| | ||||| |||||||||||||| ||||| |||||||||||||||||    | | || | | |   ||     |    || | | || |     |||   | |      |  |    |||   ||||                  
AGAAACCACCACCGGTGTCAAGAGGCTCTACCAGATGCAGGCCAATGGCTCCCTCTTGTTCCCTGCCATCAACGTCAATGACTCGGTCACCAAGAGCAAGgta---cgtaccatacattttttgtctgtttgtttgtctgtcgg--tgaaagaaatataaaagtgtttga--tgcaatttgttgcag-------------

upper sequence: LOC_Os11g26850.2 (Oryza sativa), 5'ss of exon 1
lower sequence: GLYMA05G28480.1 (Glycine max), 5'ss of exon 1
GGAGACCACCACCGGTGTCAAGAGGCTCTACCAGATGCAGGAGACCGGCGCCCTCCTCTTCCCCGCCATCAACGTCAACGACTCCGTCACCAAGAGCAAGgtgaagcatcccctccctccctttctaat-cccattatat-ttcagatctgaagctgtttgcgttagcctagcctgctgcttgtactgttctta---ccttagta
||| |||||||| ||||| |||||||| || |||||||||| ||  ||  | || |||||||| || || || ||||| ||||| || |||||||||||||| | |  ||  || |  ||   |||  | |   |||||| || | || |      ||||| |||    |    || | |||| |  | | ||    | || || 
GGAAACCACCACTGGTGTTAAGAGGCTATATCAGATGCAGGCGAATGGGACTCTACTCTTCCCTGCTATTAATGTCAATGACTCTGTTACCAAGAGCAAGgtaatgtctcttcttctcccagatctggtgctttttatatgtttaaatgtag----gtttgagttcagatctgttgtt-cttggatgggttttgtggcgttggtg

upper sequence: LOC_Os11g26850.2 (Oryza sativa), 5'ss of exon 1
lower sequence: AT3G23810.1 (Arabidopsis thaliana), 5'ss of exon 1
GGAGACCACCACCGGTGTCAAGAGGCTCTACCAGATGCAGGAGACCGGCGCCCTCCTCTTCCCCGCCATCAACGTCAACGACTCCGTCACCAAGAGCAAGgtgaagcatcccctccctccctttctaatcccattatatttcagatctgaagctgtttgcgttagccta-gcctgctgct-tgtactgttcttaccttagta-------
|||||| || || ||||| |||||||| || |||||||||||||| || || ||| | ||||| ||||| |||||||| ||||| ||||||||||||||||| | |   | | |         | ||     |  | |    ||||||||   |||||    ||   |  |  |  | |  |||  ||   | |||  | ||       
GGAGACTACTACTGGTGTTAAGAGGCTTTATCAGATGCAGGAGACTGGAGCTCTCTTGTTCCCTGCCATTAACGTCAATGACTCTGTCACCAAGAGCAAGgtaatgtggcacat---------tatagctttagaagacactagatctgatattgttttgcctaatttgtggataatacaatgttttgaaatcaccaaaatatgaatga

upper sequence: LOC_Os11g26850.2 (Oryza sativa), 5'ss of exon 1
lower sequence: AT4G13940.1 (Arabidopsis thaliana), 5'ss of exon 1
GGAGACCACCACCGGTGTCAAGAGGCTCTACCAGATGCAGGAGACCGGCGCCCTCCTCTTCCCCGCCATCAACGTCAACGACTCCGTCACCAAGAGCAAGgtgaagcatccc---ctccctccctttctaatcccattatattt--cagatctgaagctgtttgcgttagcctagcctgctgcttgtactgttcttaccttagta
||| || ||||| ||||| |||||||| |||||||||||| | |  ||  | ||  | ||||| ||||| ||||| |||||||| |||||||||||||||||   |     |    |   | | || ||| |     || || |   || |||  |||| | |   ||    |    |     |   |      | | |      
GGAAACTACCACTGGTGTTAAGAGGCTTTACCAGATGCAGCAAAATGGAACTCTTTTGTTCCCTGCCATTAACGTTAACGACTCTGTCACCAAGAGCAAGgtattgatcttcagatttgtttctttactagtgatgataaatctgctaggtctttagctctgtagtttttgatgcgataggcttaacaacaacataatca-----

upper sequence: LOC_Os11g26850.2 (Oryza sativa), 5'ss of exon 1
lower sequence: Vv17s0000g09840.t01 (Vitis vinifera), 5'ss of exon 1
GGAGACCACCACCGGTGTCAAGAGGCTCTACCAGATGCAGGAGACCGGCGCCCTCCTCTTCCCCGCCATCAACGTCAACGACTCCGTCACCAAGAGCAAGgtgaagcatcc---cctccctccctttctaatcccattatatttcagatctgaagctgtttgcgttagcctagcctgctgcttg-tactgttcttaccttagta
 ||||| ||||||||||| |||||||| |||||||||||||  |  ||  | ||  | ||  | || ||||| |||||||| || || |||||||||||||| | | |||      |  | | |||| ||  | | ||||||     || |   ||| ||      |   | |   | |   || || | ||   |  ||    
AGAGACAACCACCGGTGTGAAGAGGCTGTACCAGATGCAGGCAAATGGAACTCTTTTGTTTGCTGCTATCAATGTCAACGATTCTGTTACCAAGAGCAAGgtaatggatctagatttttcactctttttag-ctcgttatatactgaattttgtgctattatttcaaatttcgatggttttgtgctattatttcaagtttg---

upper sequence: LOC_Os11g26850.2 (Oryza sativa), 5'ss of exon 1
lower sequence: Vv05s0029g00330.t01 (Vitis vinifera), 5'ss of exon 1
GGAGACCACCACCGGTGTCAAGAGGCTCTACCAGATGCAGGAGACCGGCGCCCTCCTCTTCCCCGCCATCAACGTCAACGACTCCGTCACCAAGAGCAAGgtgaagcatcccctccctccctttctaatcccattatatttcagatctgaagctgtttgc---gttagcctagcctg--ctgcttgtactgttcttaccttagta---------------------------------------------------
|||||||||||||||||| |||||||| ||||||||||| |  | |||| |  | || ||||| || || || ||||| ||||| |||||||||||||||||  |   |||    |     | | |      ||| | ||  |    | || |  ||||    ||    ||||  ||   | || | |  || | ||  || ||                                                    
GGAGACCACCACCGGTGTTAAGAGGCTTTACCAGATGCAAGCTAACGGCACTTTGCTTTTCCCTGCTATTAATGTCAATGACTCTGTCACCAAGAGCAAGgt--attctccagatctgtgatatttggg--aattgttttcaacgattcaaccaatttgtttggtggatctagtttggattactagaagagt-cgtaattttgtgttttgttttgttttgtttttcttaacaattttctgttctggatgcaaacag

upper sequence: LOC_Os11g26850.2 (Oryza sativa), 5'ss of exon 1
lower sequence: PP1S20_229V6.1 (Physcomitrella patens), 5'ss of exon 2
GGAGACCACCACCGGTGTCAAGAGGCTCTACCAGATGCAGGAGACCGGCGCCCTCCTCTTCCCCGCCATCAACGTCAACGACTCCGTCACCAAGAGCAAGgtgaagcatcccctccctccctttctaatcccattatatttcagatctgaagctgtttgcgttagcctagcctgctgcttgtactgttcttaccttagta
 ||||| || ||||| || ||| |  | |||||||||  ||| | |||  | ||  | ||||||||||||||||| |||||||| ||||| ||||||||||| | |    || |  ||  |       |  | || |   |  ||| ||| | ||| || ||| ||   | |||  |||||   |||| |          
AGAGACGACGACCGGAGTGAAGCGTTTGTACCAGATGATGGACAACGGATCTCTGTTGTTCCCCGCCATCAACGTGAACGACTCTGTCACGAAGAGCAAGgtaatgtggtccgtgactgtcggatacctttcgtt-tggatgtgatttgatggtgtgtg-gttggc---ggctgacgcttgggttgttgtgcag------

upper sequence: LOC_Os11g26850.2 (Oryza sativa), 5'ss of exon 1
lower sequence: EFJ11220 (Selaginella moellendorffii), 5'ss of exon 1
GGAGACCACCACCGGTGTCAAGAGGCTCTACCAGATGCAGGAGACCGGCGCCCTCCTCTTCCCCGCCATCAACGTCAACGACTCCGTCACCAAGAGCAAGgtgaagcatcccctccctccctttctaatcccattatatttcagatctgaagctgtttgcgttagcctagcctgctgcttgtactgttcttaccttagta
|||||||||||| |||||||||||||||||||||||||||  ||  ||  | || |||||||| || ||||| |||||||| || |||||||||||||||||          ||| |  | | | |  |   ||| | ||  | |  |   |||  | | |   || |       | ||| ||| |              
GGAGACCACCACTGGTGTCAAGAGGCTCTACCAGATGCAGTCGAATGGATCGCTGCTCTTCCCGGCTATCAATGTCAACGATTCAGTCACCAAGAGCAAGgta---------ctcacgacttcttttgttt-attgtcttgaaaagttagtgctcatcgtgagtgctt-------ttcttttacag--------------

upper sequence: LOC_Os11g26850.2 (Oryza sativa), 5'ss of exon 1
lower sequence: EFJ11444 (Selaginella moellendorffii), 5'ss of exon 1
GGAGACCACCACCGGTGTCAAGAGGCTCTACCAGATGCAGGAGACCGGCGCCCTCCTCTTCCCCGCCATCAACGTCAACGACTCCGTCACCAAGAGCAAGgtgaagcatcccctccctccctttctaatcccattatatttcagatctgaagctgtttgcgttagcctagcctgctgcttgtactgttcttaccttagta
|||||||||||| |||||||||||||||||||||||||||  ||  ||  | || |||||||| || ||||| |||||||| || |||||||||||||||||      || |  |      | | || || | | | |  | ||  || |   ||  ||| ||    |   | |                          
GGAGACCACCACTGGTGTCAAGAGGCTCTACCAGATGCAGTCGAATGGATCGCTGCTCTTCCCGGCTATCAATGTCAACGATTCAGTCACCAAGAGCAAGgtac----tcacgacttcttttgtttattctcttgaaaagttagtgctcatcgtgagtgcttttctttttacag--------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|218500538|gb|FG947088.1|FG947088
EST:     CCCTCCTCTTCCCCGCCATCAACGTCAACGACTCCGTCACCAAGAGCAAG                         TTTGACAACCTGTATGGTTGCCGCCACTCTCTCCCTGATGGTCTCATGAGG
genomic: CCCTCCTCTTCCCCGCCATCAACGTCAACGACTCCGTCACCAAGAGCAAGgtgaagcatc ... ttctgaacagTTTGACAACCTGTATGGTTGCCGCCACTCTCTCCCTGATGGTCTCATGAGG
EST: gi|58608421|gb|CK036454.1|CK036454
EST:     CCCTCCTCTTCCCCGCCATCAACGTCAACGACTCCGTCACCAAGAGCAAG                         TTTGACAACCTGTATGGTTGCCGCCACTCTCTCCCTGATGGTCTCATTAGG
genomic: CCCTCCTCTTCCCCGCCATCAACGTCAACGACTCCGTCACCAAGAGCAAGgtgaagcatc ... ttctgaacagTTTGACAACCTGTATGGTTGCCGCCACTCTCTCCCTGATGGTCTCATGAGG
EST: gi|29685951|gb|CB682226.1|CB682226
EST:     CCCTCCTCTTCCCCGCCATCAACGTCAACGACTCCGTCACCAAGAGCAAG                         TTTGACAACCTGTATGGTTGCCGCCACTCTCTCCCTGATGGTCTCATGAGG
genomic: CCCTCCTCTTCCCCGCCATCAACGTCAACGACTCCGTCACCAAGAGCAAGgtgaagcatc ... ttctgaacagTTTGACAACCTGTATGGTTGCCGCCACTCTCTCCCTGATGGTCTCATGAGG
EST: gi|29614493|gb|CB619506.1|CB619506
EST:     CCCTCCTCTTCCCCGCCATCAACGTCAACGACTCCGTCACCAAGAGCAAG                         TTTGACAACCTGTATGGTTGCCGCCACTCTCTCCCTGATGGTCTCATGAGG
genomic: CCCTCCTCTTCCCCGCCATCAACGTCAACGACTCCGTCACCAAGAGCAAGgtgaagcatc ... ttctgaacagTTTGACAACCTGTATGGTTGCCGCCACTCTCTCCCTGATGGTCTCATGAGG
EST: gi|29615858|gb|CB620870.1|CB620870
EST:     CCCTCCTCTTCCCCGCCATCAACGTCAACGACTCCGTCACCAAGAGCAAG                         TTTGACAACCTGTATGGTTGCCGCCACTCTCTCCCTGATGGTCTCATGAGG
genomic: CCCTCCTCTTCCCCGCCATCAACGTCAACGACTCCGTCACCAAGAGCAAGgtgaagcatc ... ttctgaacagTTTGACAACCTGTATGGTTGCCGCCACTCTCTCCCTGATGGTCTCATGAGG
EST: gi|58656224|gb|CK044904.1|CK044904
EST:     CCCTCCTCTTCCCCGCCATCAACGTCAACGACTCCGTCACCAAGAGCAAG                         TTTGACAACCTGTATGGTTGCCGCCACTCTCTCCCTGATGGTCTCATGAGG
genomic: CCCTCCTCTTCCCCGCCATCAACGTCAACGACTCCGTCACCAAGAGCAAGgtgaagcatc ... ttctgaacagTTTGACAACCTGTATGGTTGCCGCCACTCTCTCCCTGATGGTCTCATGAGG
EST: gi|32948470|gb|BP185042.1|BP185042
EST:     GTCACCAAGAGCAAG                         TTTGACAACCTGTATGGTTGCCGCCACTCTCTCCCTGATGGTCTCATGAGG
genomic: GTCACCAAGAGCAAGgtgaagcatc ... ttctgaacagTTTGACAACCTGTATGGTTGCCGCCACTCTCTCCCTGATGGTCTCATGAGG
EST: gi|218482374|gb|FG946493.1|FG946493
EST:     CCCTCCTCTTCCCCGCCATCAACGTCAACGACTCCGTCACCAAGAGCAAG                         TTTGACAACCTGTATGGTTGCCGCCACTCTCTCCCTGATGGTCTCATGAGG
genomic: CCCTCCTCTTCCCCGCCATCAACGTCAACGACTCCGTCACCAAGAGCAAGgtgaagcatc ... ttctgaacagTTTGACAACCTGTATGGTTGCCGCCACTCTCTCCCTGATGGTCTCATGAGG
EST: gi|300215535|gb|HO088161.1|HO088161
EST:     CCCTCCTCTTCCCCGCCATCAACGTCAACGACTCCGTCACCAAGAGCAAG                         TTTGACAACCTGTATGGTTGCCGCCACTCTCTCCCTGATGGTCTCATGAGG
genomic: CCCTCCTCTTCCCCGCCATCAACGTCAACGACTCCGTCACCAAGAGCAAGgtgaagcatc ... ttctgaacagTTTGACAACCTGTATGGTTGCCGCCACTCTCTCCCTGATGGTCTCATGAGG
EST: gi|29646398|gb|CB651405.1|CB651405
EST:     CCCTCCTCTTCCCCGCCATCAACGTCAACGACTCCGTCACCAAGAGCAAG                         TTTGACTACCTGTATGGTTGCCGCCACTCTCTCCCTGATGGTCTCATGAGG
genomic: CCCTCCTCTTCCCCGCCATCAACGTCAACGACTCCGTCACCAAGAGCAAGgtgaagcatc ... ttctgaacagTTTGACAACCTGTATGGTTGCCGCCACTCTCTCCCTGATGGTCTCATGAGG
EST: gi|58594692|gb|CF993000.1|CF993000
EST:     CCCTCCTCTTCCCCGCCATCAACGTCAACGACTCCGTCACCAAGAGCAAG                         TTTGACAACCTGTATGGTTGCCGCCACTCTCTCCCTGATGGTCTCATGAGG
genomic: CCCTCCTCTTCCCCGCCATCAACGTCAACGACTCCGTCACCAAGAGCAAGgtgaagcatc ... ttctgaacagTTTGACAACCTGTATGGTTGCCGCCACTCTCTCCCTGATGGTCTCATGAGG
EST: gi|58663647|gb|CK052333.1|CK052333
EST:     CCCTCCTCTTCCCCGCCATCAACGTCAACGACTCCGTCACCAAGAGCAAG                         TTTGACAACCTGTATGGTTGCCGCCACTCTCTCCCTGATGGTCTCATGAGG
genomic: CCCTCCTCTTCCCCGCCATCAACGTCAACGACTCCGTCACCAAGAGCAAGgtgaagcatc ... ttctgaacagTTTGACAACCTGTATGGTTGCCGCCACTCTCTCCCTGATGGTCTCATGAGG
EST: gi|5005427|gb|AU070589.1|AU070589
EST:     CCCTCCTCTTCCCCGCCATCAACGTCAACGACTCCGTCACCAAGAGCAAG                         TTTGACAACCTGTATGGTTGCCGCCA
genomic: CCCTCCTCTTCCCCGCCATCAACGTCAACGACTCCGTCACCAAGAGCAAGgtgaagcatc ... ttctgaacagTTTGACAACCTGTATGGTTGCCGCCA
EST: gi|29681461|gb|CB677736.1|CB677736
EST:     CCCTCCTCTTCCCCGCCATCAACGTCAACGACTCCGTCACCAAGAGCAAG                         TTTGACAACCTGTATGGTTGCCGCCACTCTCTCCCTGATGGTCTCATGAAG
genomic: CCCTCCTCTTCCCCGCCATCAACGTCAACGACTCCGTCACCAAGAGCAAGgtgaagcatc ... ttctgaacagTTTGACAACCTGTATGGTTGCCGCCACTCTCTCCCTGATGGTCTCATGAGG
EST: gi|58695029|gb|CK083716.1|CK083716
EST:     CCCTCCTCTTCCCCGCCATCAACGTCAACGACTCCGTCACCAAGAGCAAG                         TTTGACAACCTGTATGGTTGCCGCCACTCTCTCCCTGATGGTCTCATGAGG
genomic: CCCTCCTCTTCCCCGCCATCAACGTCAACGACTCCGTCACCAAGAGCAAGgtgaagcatc ... ttctgaacagTTTGACAACCTGTATGGTTGCCGCCACTCTCTCCCTGATGGTCTCATGAGG
EST: gi|2427980|gb|C72443.1|C72443
EST:     CCCTCCTCTTCCCCGCCATCAACGTCAACGACTCCGTCACCAAGAGCAAG                         TTTGACAACCTGTATGGTTGCCGCCACTCTCTCCCTGATGGTCTCATGANG
genomic: CCCTCCTCTTCCCCGCCATCAACGTCAACGACTCCGTCACCAAGAGCAAGgtgaagcatc ... ttctgaacagTTTGACAACCTGTATGGTTGCCGCCACTCTCTCCCTGATGGTCTCATGAGG
EST: gi|29661891|gb|CB658166.1|CB658166
EST:     CCCTCCTCTTCCCCGCCATCAACGTCAACGACTCCGTCACCAAGAGCAAG                         TTTGACAACCTGTATGGTTGCCGCCACTCTCTCCCTGATGGT
genomic: CCCTCCTCTTCCCCGCCATCAACGTCAACGACTCCGTCACCAAGAGCAAGgtgaagcatc ... ttctgaacagTTTGACAACCTGTATGGTTGCCGCCACTCTCTCCCTGATGGT
EST: gi|33681788|gb|CF310027.1|CF310027
EST:     CCCTCCTCTTCCCCGCCATCAACGTCAACGACTCCGTCACCAAGAGCAAG                         TTTGACAACCTGTATGGTTGCCGCCACTCTCTCCCTGATGGTCTCATGAGG
genomic: CCCTCCTCTTCCCCGCCATCAACGTCAACGACTCCGTCACCAAGAGCAAGgtgaagcatc ... ttctgaacagTTTGACAACCTGTATGGTTGCCGCCACTCTCTCCCTGATGGTCTCATGAGG
EST: gi|29657122|gb|CB653397.1|CB653397
EST:     CCCTCCTCTTCCCCGCCATCAACGTCAACGACTCCGTCACCAAGAGCAAG                         TTTGACAACCTGTATGGTTGCCGCCACTCTCTCCCTGATGGTCTCATGAGG
genomic: CCCTCCTCTTCCCCGCCATCAACGTCAACGACTCCGTCACCAAGAGCAAGgtgaagcatc ... ttctgaacagTTTGACAACCTGTATGGTTGCCGCCACTCTCTCCCTGATGGTCTCATGAGG
EST: gi|109974487|gb|DT806935.1|DT806935
EST:     CCCTCCTCTTCCCCGCCATCAACGTCAACGACTCCGTCACCAAGAGCAAG                         TTTGACAACCTGTATGGTTGCCGCCACTCTCTCCCTGATGGTCTCATGAGG
genomic: CCCTCCTCTTCCCCGCCATCAACGTCAACGACTCCGTCACCAAGAGCAAGgtgaagcatc ... ttctgaacagTTTGACAACCTGTATGGTTGCCGCCACTCTCTCCCTGATGGTCTCATGAGG
EST: gi|29662025|gb|CB658300.1|CB658300
EST:     CCCTCCTCTTCCCCGCCATCAACGTCAACGACTCCGTCACCAAGAGCAAG                         TTTGACAACCTGTATGGTTGCCGCCACTCTCTCCCTGATGGTCTCATGAGG
genomic: CCCTCCTCTTCCCCGCCATCAACGTCAACGACTCCGTCACCAAGAGCAAGgtgaagcatc ... ttctgaacagTTTGACAACCTGTATGGTTGCCGCCACTCTCTCCCTGATGGTCTCATGAGG
EST: gi|58684686|gb|CK073373.1|CK073373
EST:     CCCTCCTCTTCCCCGCCATCAACGTCAACGACTCCGTCACCAAGAGCAAG                         TTTGACAACCTGTATGGTTGCCGCCACTCTCTCCCTGATGGTCTCATGAGG
genomic: CCCTCCTCTTCCCCGCCATCAACGTCAACGACTCCGTCACCAAGAGCAAGgtgaagcatc ... ttctgaacagTTTGACAACCTGTATGGTTGCCGCCACTCTCTCCCTGATGGTCTCATGAGG
EST: gi|29659312|gb|CB655587.1|CB655587
EST:     CCCTCCTCTTCCCCGCCATCAACGTCAACGACTCCGTCACCAAGAGCAAG                         TTTGACAACCTGTATGGTTGCCGCCACTCTCTCCCTGATGGTCTCATGAGG
genomic: CCCTCCTCTTCCCCGCCATCAACGTCAACGACTCCGTCACCAAGAGCAAGgtgaagcatc ... ttctgaacagTTTGACAACCTGTATGGTTGCCGCCACTCTCTCCCTGATGGTCTCATGAGG
EST: gi|29659048|gb|CB655323.1|CB655323
EST:     CCCTCCTCTTCCCCGCCATCAACGTCAACGACTCCGTCACCAAGAGCAAG                         TTTGACAACCTGTATGGTTGCCGCCACTCTCTCCCTGATGGTCTCATGAGG
genomic: CCCTCCTCTTCCCCGCCATCAACGTCAACGACTCCGTCACCAAGAGCAAGgtgaagcatc ... ttctgaacagTTTGACAACCTGTATGGTTGCCGCCACTCTCTCCCTGATGGTCTCATGAGG
EST: gi|29665547|gb|CB661822.1|CB661822
EST:     CCCTCCTCTTCCC-GCCATCAACGTCAACGACTCCGTCACCAAGAGCAAG                         TTTGACAACCTGTATGGTTGCCGCCACTCTCTCCCTGATGGTCTCATGAAG
genomic: CCCTCCTCTTCCCCGCCATCAACGTCAACGACTCCGTCACCAAGAGCAAGgtgaagcatc ... ttctgaacagTTTGACAACCTGTATGGTTGCCGCCACTCTCTCCCTGATGGTCTCATGAGG
EST: gi|29617398|gb|CB622410.1|CB622410
EST:     CCCTCCTCTTCCCCGCCATCAACGTCAACGACTCCGTCACCAAGAGCAAG                         TTTGACAACCTGTATGGTTGCCGCCACTCTCTCCCTGATGGTCTCAT
genomic: CCCTCCTCTTCCCCGCCATCAACGTCAACGACTCCGTCACCAAGAGCAAGgtgaagcatc ... ttctgaacagTTTGACAACCTGTATGGTTGCCGCCACTCTCTCCCTGATGGTCTCAT
EST: gi|29659014|gb|CB655289.1|CB655289
EST:     CCCTCCTCTTCCCCGCCATCAACGTCAACGACTCCGTCACCAAGAGCAAG                         TTTGACAACCTGTATGGTTGCCGCCACTCTCTCCCTGATGGTCTCATGAGG
genomic: CCCTCCTCTTCCCCGCCATCAACGTCAACGACTCCGTCACCAAGAGCAAGgtgaagcatc ... ttctgaacagTTTGACAACCTGTATGGTTGCCGCCACTCTCTCCCTGATGGTCTCATGAGG
EST: gi|29656829|gb|CB653104.1|CB653104
EST:     CCCTCCTCTTCCCCGCCATCAACGTCAACGACTCCGTCACCAAGAGCAAG                         TTTGACAACCTGTATGGGTGCCGCCACTCT
genomic: CCCTCCTCTTCCCCGCCATCAACGTCAACGACTCCGTCACCAAGAGCAAGgtgaagcatc ... ttctgaacagTTTGACAACCTGTATGGTTGCCGCCACTCT
EST: gi|29613565|gb|CB618578.1|CB618578
EST:     CCCTCCTCTTCCCCGCCATCAACGTCAACGACTCCGTCACCAAGAGCAAG                         TTTGACAACCTGTATGGTTGCCGCCACTCTCTCCCTGATGGTCTCATGAGG
genomic: CCCTCCTCTTCCCCGCCATCAACGTCAACGACTCCGTCACCAAGAGCAAGgtgaagcatc ... ttctgaacagTTTGACAACCTGTATGGTTGCCGCCACTCTCTCCCTGATGGTCTCATGAGG
EST: gi|218500605|gb|FG960271.1|FG960271
EST:     CCCTCCTCTTCCCCGCCATCAACGTCAACGACTCCGTCACCAAGAGCAAG                         TTTGACAACCTGTATGGTTGCCGCCACTCTCTCCCTGATGGTCTCATGAGG
genomic: CCCTCCTCTTCCCCGCCATCAACGTCAACGACTCCGTCACCAAGAGCAAGgtgaagcatc ... ttctgaacagTTTGACAACCTGTATGGTTGCCGCCACTCTCTCCCTGATGGTCTCATGAGG
EST: gi|55828158|gb|AU065829.3|AU065829
EST:     CCCTCCTCTTCCCCGCCATCAACGTCAACGACTCCGTCACCAAGAGCAAG                         TTTGACAACCTGTATGGTTGCCGNCACTCTCTCCCTGATGGTCTCATGAGG
genomic: CCCTCCTCTTCCCCGCCATCAACGTCAACGACTCCGTCACCAAGAGCAAGgtgaagcatc ... ttctgaacagTTTGACAACCTGTATGGTTGCCGCCACTCTCTCCCTGATGGTCTCATGAGG
EST: gi|29617513|gb|CB622525.1|CB622525
EST:     CCCTCCTCTTCCCCGCCATCAACGTCAACGACTCCGTCACCAAGAGCAAG                         TTTGACAACCTGTATGGTTGCCGCCACTCTCTCCCTGATGGTCTCA
genomic: CCCTCCTCTTCCCCGCCATCAACGTCAACGACTCCGTCACCAAGAGCAAGgtgaagcatc ... ttctgaacagTTTGACAACCTGTATGGTTGCCGCCACTCTCTCCCTGATGGTCTCA
EST: gi|29676993|gb|CB673268.1|CB673268
EST:     CCCTCCTCTTCCCCGCCATCAACGTCAACGACTCCGTCACCAAGAGCAAG                         TTTGACAACCTGTATGGTTGCCGCCACTCTCTCCCTGATGGTCTCATGAGG
genomic: CCCTCCTCTTCCCCGCCATCAACGTCAACGACTCCGTCACCAAGAGCAAGgtgaagcatc ... ttctgaacagTTTGACAACCTGTATGGTTGCCGCCACTCTCTCCCTGATGGTCTCATGAGG
EST: gi|8857863|gb|AU095181.1|AU095181
EST:     CCCTCCTCTTCCCCGCCATCAACGTCAACGACTCCGTCACCAAGAGCAAG                         TTTTGACAACCTGTATGGTTGCCGCCAATCTCTTCCCTGATGGTCTCATGA
genomic: CCCTCCTCTTCCCCGCCATCAACGTCAACGACTCCGTCACCAAGAGCAAGgtgaagcatc ... ttctgaacagTTT-GACAACCTGTATGGTTGCCGCCACTCTCT-CCCTGATGGTCTCATGA
EST: gi|29615451|gb|CB620463.1|CB620463
EST:     CCCTCCTCTTCCCCGCCATCAACGTCAACGACTCCGTCACCAAGAGCAAG                         TTTGACAACCTGTATGGTTGCCGCCACTCTCTCCCTGATGGTCTCA
genomic: CCCTCCTCTTCCCCGCCATCAACGTCAACGACTCCGTCACCAAGAGCAAGgtgaagcatc ... ttctgaacagTTTGACAACCTGTATGGTTGCCGCCACTCTCTCCCTGATGGTCTCA
EST: gi|29686481|gb|CB682756.1|CB682756
EST:     CCCTCCTCTTCCCCGCCATCAACGTCAACGACTCCGTCACCAAGAGCAAG                         TTTGACAACCTGTATGGTTGCCGCCACTCTCTCCCTGATGGTCTCATGAGG
genomic: CCCTCCTCTTCCCCGCCATCAACGTCAACGACTCCGTCACCAAGAGCAAGgtgaagcatc ... ttctgaacagTTTGACAACCTGTATGGTTGCCGCCACTCTCTCCCTGATGGTCTCATGAGG
EST: gi|29620458|gb|CB625469.1|CB625469
EST:     CCCTCCTCTTCCC-GCCATCAACGTCAACGACTCCGTCACCAAGAGCAAG                         TTTGACAACCTGTATGGTTGCCGCCACTCTCTCCCTGATGGTCTCATGAGG
genomic: CCCTCCTCTTCCCCGCCATCAACGTCAACGACTCCGTCACCAAGAGCAAGgtgaagcatc ... ttctgaacagTTTGACAACCTGTATGGTTGCCGCCACTCTCTCCCTGATGGTCTCATGAGG
EST: gi|29687815|gb|CB684090.1|CB684090
EST:     CCCTCCTCTTCCCCGCCATCAACGTCAACGACTCCGTCACCAAGAGCAAG                         TTTGACAACCTGTATGGTTGCCGCCACTCTCTCCCTGATGGTCTCATGAGG
genomic: CCCTCCTCTTCCCCGCCATCAACGTCAACGACTCCGTCACCAAGAGCAAGgtgaagcatc ... ttctgaacagTTTGACAACCTGTATGGTTGCCGCCACTCTCTCCCTGATGGTCTCATGAGG
EST: gi|33800781|gb|CF326262.1|CF326262
EST:     CCCTCCTCTTCCCCGCCATCAACGTCAACGACTCCGTCACCAAGAGCAAG                         TTTGACAACCTGTATGGTTGCCGCCACTCTCTCCCTGATGGTCTCATGAGG
genomic: CCCTCCTCTTCCCCGCCATCAACGTCAACGACTCCGTCACCAAGAGCAAGgtgaagcatc ... ttctgaacagTTTGACAACCTGTATGGTTGCCGCCACTCTCTCCCTGATGGTCTCATGAGG
EST: gi|29617511|gb|CB622523.1|CB622523
EST:     CCCTCCTCTTCCCCGCCATCAACGTCAACGACTCCGTCACCAAGAGCAAG                         TTTGACAACCTGTATGGTTGCCGCCACTCTCTCCCTGATGGTCTCATGAGG
genomic: CCCTCCTCTTCCCCGCCATCAACGTCAACGACTCCGTCACCAAGAGCAAGgtgaagcatc ... ttctgaacagTTTGACAACCTGTATGGTTGCCGCCACTCTCTCCCTGATGGTCTCATGAGG
EST: gi|44679169|gb|CR292603.1|CR292603
EST:     CCCTCCTCTTCCCCGCCATCAACGTCAACGACTCCGTCACCAAGAGCAAG                         TTTGACAACCTGTATGGTTGCCGCCACTCTCTCCCTGATGGTCTCATGAGG
genomic: CCCTCCTCTTCCCCGCCATCAACGTCAACGACTCCGTCACCAAGAGCAAGgtgaagcatc ... ttctgaacagTTTGACAACCTGTATGGTTGCCGCCACTCTCTCCCTGATGGTCTCATGAGG
EST: gi|58601116|gb|CK011644.1|CK011644
EST:     CAACGACTCCGTCACCAAGAGCAAG                         -TTGACAACCTGTATGGTTGCCGCCACTGTCTCCCTGATGGTCTCATGAGG
genomic: CAACGACTCCGTCACCAAGAGCAAGgtgaagcatc ... ttctgaacagTTTGACAACCTGTATGGTTGCCGCCACTCTCTCCCTGATGGTCTCATGAGG
EST: gi|29659211|gb|CB655486.1|CB655486
EST:     CCCTCCTCTTCCCCGCCATCAACGTCAACGACTCCGTCACCAAGAGCAAG                         TTTGACAACCTGTATGGTTGCCGCCACTCTCTCCCTGATGGTCTCATGAGG
genomic: CCCTCCTCTTCCCCGCCATCAACGTCAACGACTCCGTCACCAAGAGCAAGgtgaagcatc ... ttctgaacagTTTGACAACCTGTATGGTTGCCGCCACTCTCTCCCTGATGGTCTCATGAGG
EST: gi|29687139|gb|CB683414.1|CB683414
EST:     CCCTCCTCTTCCCCGCCATCAACGTCAACGACTCCGTCACCAAGAGCAAG                         TTTGACAACCTGTATGGTTGCCGCCACTCTCTCCCTGATGGTCTC
genomic: CCCTCCTCTTCCCCGCCATCAACGTCAACGACTCCGTCACCAAGAGCAAGgtgaagcatc ... ttctgaacagTTTGACAACCTGTATGGTTGCCGCCACTCTCTCCCTGATGGTCTC
EST: gi|29623523|gb|CB628534.1|CB628534
EST:     CCCTCCTCTTCCCCGCCATCAACGTCAACGACTCCGTCACCAAGAGCAAG                         TTTGACAACCTGTATGGTTGCCGCCACTCTCTCCCTGATGGTCTCATGAGG
genomic: CCCTCCTCTTCCCCGCCATCAACGTCAACGACTCCGTCACCAAGAGCAAGgtgaagcatc ... ttctgaacagTTTGACAACCTGTATGGTTGCCGCCACTCTCTCCCTGATGGTCTCATGAGG
EST: gi|29660958|gb|CB657233.1|CB657233
EST:     CCCTCCTCTTCCCCGCCATCAACGTCAACGACTCCGTCACCAAGAGCAAG                         TTTGACAACCTGTATGGTTGCCGCCACTCTCTCCCTGATGGTCTCATGAGG
genomic: CCCTCCTCTTCCCCGCCATCAACGTCAACGACTCCGTCACCAAGAGCAAGgtgaagcatc ... ttctgaacagTTTGACAACCTGTATGGTTGCCGCCACTCTCTCCCTGATGGTCTCATGAGG
EST: gi|29670375|gb|CB666650.1|CB666650
EST:     CCCTCCTCTTCCCCGCCATCAACGTCAACGACTCCGTCACCAAGAGCAAG                         TTTGACAACCTGTATGGTTGCCGCCACTCTCTCCCTGATGGTCTCATGAGG
genomic: CCCTCCTCTTCCCCGCCATCAACGTCAACGACTCCGTCACCAAGAGCAAGgtgaagcatc ... ttctgaacagTTTGACAACCTGTATGGTTGCCGCCACTCTCTCCCTGATGGTCTCATGAGG
EST: gi|3768585|gb|AU032612.1|AU032612
EST:     CCCTCCTCTTCCCCGCCATCAACGTCAACGACTCCGTCACCAAGAGCAAG                         TTTGACAACCTGTATGGTTGCCGCCACTCTCTCCCTGATGGTCTCATGAGG
genomic: CCCTCCTCTTCCCCGCCATCAACGTCAACGACTCCGTCACCAAGAGCAAGgtgaagcatc ... ttctgaacagTTTGACAACCTGTATGGTTGCCGCCACTCTCTCCCTGATGGTCTCATGAGG
EST: gi|29613567|gb|CB618580.1|CB618580
EST:     CCCTCCTCTTCCCCGCCATCAACGTCAACGACTCCGTCACCAAGAGCAAG                         TTTGACAACCTGTATGGTTGCCGCCACTCTCTCCCTGATGGTCTCATGAGG
genomic: CCCTCCTCTTCCCCGCCATCAACGTCAACGACTCCGTCACCAAGAGCAAGgtgaagcatc ... ttctgaacagTTTGACAACCTGTATGGTTGCCGCCACTCTCTCCCTGATGGTCTCATGAGG
EST: gi|218501115|gb|FG967352.1|FG967352
EST:     CCCTCCTCTTCCCCGCCATCAACGTCAACGACTCCGTCACCAAGAGCAAG                         TTTGACAACCTGTATGGTTGCCGCCACTCTCTCCCTGATGGTCTCATGAGG
genomic: CCCTCCTCTTCCCCGCCATCAACGTCAACGACTCCGTCACCAAGAGCAAGgtgaagcatc ... ttctgaacagTTTGACAACCTGTATGGTTGCCGCCACTCTCTCCCTGATGGTCTCATGAGG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 75 (upstream exon), 75 (downstream exon)
Score: 487

GGAGACCACCACCGGTGTCAAGAGGCTCTACCAGATGCAGGAGACCGGCGCCCTCCTCTTCCCCGCCATCAACGTCAACGACTCCGTCACCAAGAGCAAGgtgaagcatc ... ttctgaacagTTTGACAACCTGTATGGTTGCCGCCACTCTCTCCCTGATGGTCTCATGAGGGCTACCGATGTTATGATCGCTGGCAAGGTTGCCGTGGTCTGCGGTTATG




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGAGACCACCACCGGTGTCAAGAGGCTCTACCAGATGCAGGAGACCGGCGCCCTCCTCTTCCCCGCCATCAACGTCAACGACTCCGTCACCAAGAGCAAGgtgaagcatcccctccctccctttctaatcccattatatttcagatctgaagctgtttgcgttagcctagcctgctgcttgtactgttcttaccttagta

- - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cccctcc