1 5' 3' | 2 5' 3' | 3 5' 3' |
GGCGATCCCGGTCATCGACTTCTCCAAGCTCGACGGCGATGAGAGCGAGGCCACCCTGGCGGAGCTCGCTGCGGGGTTTGAGGAGTGGGGGTTCTTCCAGgtaatcaaacacatgaaaaccatgctgaacaatgcataaattttcttccaccatcagagcactgataggaagagatatatgatgtggatcaattatgatgcag
species | Oryza sativa |
transcript | LOC_Os11g08380.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CCACCCTGGCGGAGCTCGCTGCGGGGTTTGAGGAGTGGGGGTTCTTCCAG CTGGTGAACACTGGCATCCCTGATGATCTGCTGGAAAGGGTGAAGEST: gi|117240876|gb|CT842871.1|CT842871
genomic: CCACCCTGGCGGAGCTCGCTGCGGGGTTTGAGGAGTGGGGGTTCTTCCAGgtaatcaaac ... tatgatgcagCTGGTGAACACTGGCATCCCTGATGATCTGCTGGAAAGGGTGAAG
EST: CCACCCTGGCGGAGCTCGCTGCGGGGTTTGAGGAGTGGGGGTTCTTCCAG CTGGTGAACACTGGCATCCCTGATGATCTGCTGGAAAGGGTGAAGAAGGTG
genomic: CCACCCTGGCGGAGCTCGCTGCGGGGTTTGAGGAGTGGGGGTTCTTCCAGgtaatcaaac ... tatgatgcagCTGGTGAACACTGGCATCCCTGATGATCTGCTGGAAAGGGTGAAGAAGGTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGCGATCCCGGTCATCGACTTCTCCAAGCTCGACGGCGATGAGAGCGAGGCCACCCTGGCGGAGCTCGCTGCGGGGTTTGAGGAGTGGGGGTTCTTCCAGgtaatcaaacacatgaaaaccatgctgaacaatgcataaattttcttccaccatcagagcactgataggaagagatatatgatgtggatcaattatgatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG