1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
AATTCTTACACTATGGGACCGGCAAGAGTTCTCATCGATGAGGGAGACGATTGTTAGGGCTGTTGTGACCAATCTCCATTTGTTGGATCTCGGAATGCAGgtgctgaccttacatcatcttactttagcctagcgaatttgatgattatgtttagctattttctatcatatattcactaattgttcttttagcccaaaac...
species | Oryza sativa |
transcript | LOC_Os11g07470.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TTGTTAGGGCTGTTGTGACCAATCTCCATTTGTTGGATCTCGGAATGCAG GTGTCTCTGTTCAAAAGACTTCTTCAGATGGTGAGAAACTTGAGAGCCGAAEST: gi|88344489|gb|CI677544.1|CI677544
genomic: TTGTTAGGGCTGTTGTGACCAATCTCCATTTGTTGGATCTCGGAATGCAGgtgctgacct ... tatgacacagGTGTCTCTGTTCAAAAGACTTCTTCAGATGGTGAGAAACTTGAGAGCCGAA
EST: TCGTTAGGGCTGTTGTGACCAATCTCCATTTGTTGGATCTCGGAATGCAG GTGTCTCTGTTCAAAAGACTTCTTCAGATGGTGAGAAACTTGAGAGCCGAAEST: gi|88463684|gb|CI696160.1|CI696160
genomic: TTGTTAGGGCTGTTGTGACCAATCTCCATTTGTTGGATCTCGGAATGCAGgtgctgacct ... tatgacacagGTGTCTCTGTTCAAAAGACTTCTTCAGATGGTGAGAAACTTGAGAGCCGAA
EST: TTGTCAGGGCTGTTGTGACCAATCTCCATTTGTTGGATCTCGGAATGCAG GTGTCTCTGTTCAAAAGACTTCTTCAGATGGTGAGAAACTTGAGAGCCGAAEST: gi|88400956|gb|CI684931.1|CI684931
genomic: TTGTTAGGGCTGTTGTGACCAATCTCCATTTGTTGGATCTCGGAATGCAGgtgctgacct ... tatgacacagGTGTCTCTGTTCAAAAGACTTCTTCAGATGGTGAGAAACTTGAGAGCCGAA
EST: TTGTTAGGGCTGTTGTGACCAATCTCCATTTGTTGGATCTCGGAATGCAG GTGTCTCTGTTCAAAAGACTTCTTCAGATGGTGAGAAACTTGAGAGCCGAAEST: gi|88365330|gb|CI679964.1|CI679964
genomic: TTGTTAGGGCTGTTGTGACCAATCTCCATTTGTTGGATCTCGGAATGCAGgtgctgacct ... tatgacacagGTGTCTCTGTTCAAAAGACTTCTTCAGATGGTGAGAAACTTGAGAGCCGAA
EST: TTGTTAGGGCTGTTGTGACCAATCTCCATTTGTTGGATCTCGGAATGCAG GTGTCTCTGTTCAAAAGACTTCTTCAGATGGTGAGAAACTTGAGAGCCGAAEST: gi|95101416|gb|CI693164.1|CI693164
genomic: TTGTTAGGGCTGTTGTGACCAATCTCCATTTGTTGGATCTCGGAATGCAGgtgctgacct ... tatgacacagGTGTCTCTGTTCAAAAGACTTCTTCAGATGGTGAGAAACTTGAGAGCCGAA
EST: TTGTTAGGGCTGTTGTGACCAATCTCCATTTGTTGGATCTCGGAATGCAG GTGTCTCTGTTCAAAAGACTTCTTCAGATGGTGAGAAACTTGAGAGCCGAAEST: gi|88310616|gb|CI672477.1|CI672477
genomic: TTGTTAGGGCTGTTGTGACCAATCTCCATTTGTTGGATCTCGGAATGCAGgtgctgacct ... tatgacacagGTGTCTCTGTTCAAAAGACTTCTTCAGATGGTGAGAAACTTGAGAGCCGAA
EST: TTGTTAGGGCTGTTGTGACCAATCTCCATTTGTTGGATCTCGGAATGCAG GTGTCTCTGTTCAAAAGACTTCTTCAGATGGTGAGAAACTTGAGAGCCGAAEST: gi|569054|gb|D39903.1|D39903
genomic: TTGTTAGGGCTGTTGTGACCAATCTCCATTTGTTGGATCTCGGAATGCAGgtgctgacct ... tatgacacagGTGTCTCTGTTCAAAAGACTTCTTCAGATGGTGAGAAACTTGAGAGCCGAA
EST: TTGTTAGGGCTGTTGTGACCAATCTCCATTTGTTGGATCTCGGAATGCAG GTGTCTCTGTTCAAAAGACTTCTTCAGATGGTGAGAAACTTGAGAGCCGAAEST: gi|88578399|gb|CI687325.1|CI687325
genomic: TTGTTAGGGCTGTTGTGACCAATCTCCATTTGTTGGATCTCGGAATGCAGgtgctgacct ... tatgacacagGTGTCTCTGTTCAAAAGACTTCTTCAGATGGTGAGAAACTTGAGAGCCGAA
EST: TTGTTAGGGCTGTTGTGACCAATCTCCATTTGTTGGATCTCGGAATGCAG GTGTCTCTGTTCAAAAGACTTCTTCAGATGGTGAGAAACTTGAGAGCCGAAEST: gi|88404986|gb|CI685425.1|CI685425
genomic: TTGTTAGGGCTGTTGTGACCAATCTCCATTTGTTGGATCTCGGAATGCAGgtgctgacct ... tatgacacagGTGTCTCTGTTCAAAAGACTTCTTCAGATGGTGAGAAACTTGAGAGCCGAA
EST: TTGTTAGGGCTGTTGTGACCAATCTCCATTTGTTGGATCTCGGAATGCAG GTGTCTCTGTTCAAAAGACTTCTTCAGATGGTGAGAAACTTGAGAGCCGAA
genomic: TTGTTAGGGCTGTTGTGACCAATCTCCATTTGTTGGATCTCGGAATGCAGgtgctgacct ... tatgacacagGTGTCTCTGTTCAAAAGACTTCTTCAGATGGTGAGAAACTTGAGAGCCGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AATTCTTACACTATGGGACCGGCAAGAGTTCTCATCGATGAGGGAGACGATTGTTAGGGCTGTTGTGACCAATCTCCATTTGTTGGATCTCGGAATGCAGgtgctgaccttacatcatcttactttagcctagcgaatttgatgattatgtttagctattttctatcatatattcactaattgttcttttagcccaaaac
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