1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
TTTTTTTCTCTTCTCTCTCCGCCTCGCAGAGTCGCAGCGGAGGAGTTGCATAGACGAAGCGGAGGAGGAGGCAGCGAGGCGAGGCGAGCCCAATCGGAAGgtgcgattcgttcctctcctcctcgatttggttgggctcgcgtcgctgactcggcggcggcggcggtggaggtggtggtggtggatttgggaggtggggg...
species | Oryza sativa |
transcript | LOC_Os11g06760.2 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CCCAATCGGAAG GCATGGATAGATACCAAAGGGTGGAGAAGCCTCGCAATGAGACACCAATTAEST: gi|88305104|gb|CI652039.1|CI652039
genomic: CCCAATCGGAAGgtgcgattcg ... caattcatagGCATGGATAGATACCAAAGGGTGGAGAAGCCTCGCAATGAGACACCAATTA
EST: TAGACGAAGCGGAGGAGGAGGCAGCGAGGCGAGGCGAGCCCAATCGGAAG GCATGGATAGATACCAAAGGGTGGAGAAGCCTCGCAATGAGACACCAATTA
genomic: TAGACGAAGCGGAGGAGGAGGCAGCGAGGCGAGGCGAGCCCAATCGGAAGgtgcgattcg ... caattcatagGCATGGATAGATACCAAAGGGTGGAGAAGCCTCGCAATGAGACACCAATTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTTTTTTCTCTTCTCTCTCCGCCTCGCAGAGTCGCAGCGGAGGAGTTGCATAGACGAAGCGGAGGAGGAGGCAGCGAGGCGAGGCGAGCCCAATCGGAAGgtgcgattcgttcctctcctcctcgatttggttgggctcgcgtcgctgactcggcggcggcggcggtggaggtggtggtggtggatttgggaggtggggg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cctcctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tcggcgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggcggcg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtggagg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggtggtgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggtgggg