Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGCGCTGTCCTAGGGTTTACCCTGCTCCGCCTCCACACACACCCCACCGCCACTCGGCGCCGCCACCCCGCACCAGgtaaccatctcatccttcgcctcccctcgattcgctgctcgcctgcggcggcggcgcggctaggccatttcgttgccggcgtcggcctgcgggttcaccggtgggtgctttgccgcgtttgcttttgtcgtggatctgatggagtttgcgttttctcgcgggattttgtag

Basic information

species Oryza sativa
transcript LOC_Os11g06750.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33654547|gb|CF277161.1|CF277161
EST:     ACACACACCCCACCGCCACTCGGCGCCGCCACCCCGCACCAG                         GTAAGGGAGGAGGAGTAAGAAGATGTCGCACAGGAAGTTCGAGCACCCGAG
genomic: ACACACACCCCACCGCCACTCGGCGCCGCCACCCCGCACCAGgtaaccatct ... gattttgtagGTAAGGGAGGAGGAGTAAGAAGATGTCGCACAGGAAGTTCGAGCACCCGAG
EST: gi|58608803|gb|CK036836.1|CK036836
EST:     GGCGCCGCCACCCCGCACCAG                         GTAAGGGAGGAGGAGTAAGAAGATGTCGCACAGGAAGTTCGAGCACCCGAG
genomic: GGCGCCGCCACCCCGCACCAGgtaaccatct ... gattttgtagGTAAGGGAGGAGGAGTAAGAAGATGTCGCACAGGAAGTTCGAGCACCCGAG
EST: gi|33682034|gb|CF310273.1|CF310273
EST:     GCCTCCACACACACCCCACCGCCACTCGGCGCCGCCACCCCGCACCAG                         GTAAGGGAGGAGGAGTAAGAAGATGTCGCACAGGAAGTTCGAGCACCCGAG
genomic: GCCTCCACACACACCCCACCGCCACTCGGCGCCGCCACCCCGCACCAGgtaaccatct ... gattttgtagGTAAGGGAGGAGGAGTAAGAAGATGTCGCACAGGAAGTTCGAGCACCCGAG
EST: gi|27554206|gb|CA998106.1|CA998106
EST:     CCGCCACTCGGCGCCGCCACCCCGCACCAG                         GTAAGGGAGGAGGAGTAAGAAGATGTCGCACAGGAAGTTCGAGCACCCGAG
genomic: CCGCCACTCGGCGCCGCCACCCCGCACCAGgtaaccatct ... gattttgtagGTAAGGGAGGAGGAGTAAGAAGATGTCGCACAGGAAGTTCGAGCACCCGAG
EST: gi|58600514|gb|CK011042.1|CK011042
EST:     CTCGGCGCCGCCACCCCGCACCAG                         GTAAGGGAGGAGGAGTAAGAAGATGTCGCACAGGAAGTTCGAGCACCCGAG
genomic: CTCGGCGCCGCCACCCCGCACCAGgtaaccatct ... gattttgtagGTAAGGGAGGAGGAGTAAGAAGATGTCGCACAGGAAGTTCGAGCACCCGAG
EST: gi|117216971|gb|CT845288.1|CT845288
EST:     GCCTCCACACACACCCCACCGCCACTCGGCGCCGCCACCCCGCACCAG                         GTAAGGGAGGAGGAGTAAGAAGATGTCGCACAGGAAGTTCGAGCACCCGAG
genomic: GCCTCCACACACACCCCACCGCCACTCGGCGCCGCCACCCCGCACCAGgtaaccatct ... gattttgtagGTAAGGGAGGAGGAGTAAGAAGATGTCGCACAGGAAGTTCGAGCACCCGAG
EST: gi|88745183|gb|CI768543.1|CI768543
EST:     TCCACACACACCCCACCGCCACTCGGCGCCGCCACCCCGCACCAG                         GTAAGGGAGGAGGAGTAAGAAGATGTCGCACAGGAAGTTCGAGCACCCGAG
genomic: TCCACACACACCCCACCGCCACTCGGCGCCGCCACCCCGCACCAGgtaaccatct ... gattttgtagGTAAGGGAGGAGGAGTAAGAAGATGTCGCACAGGAAGTTCGAGCACCCGAG
EST: gi|58679138|gb|CK067825.1|CK067825
EST:     GGCGCCGCCACCCCGCACCAG                         GTAAGGGAGGAGGAGTAAGAAGATGTCGCACAGGAAGGTCGAGCACCCGAG
genomic: GGCGCCGCCACCCCGCACCAGgtaaccatct ... gattttgtagGTAAGGGAGGAGGAGTAAGAAGATGTCGCACAGGAAGTTCGAGCACCCGAG
EST: gi|58604279|gb|CK014807.1|CK014807
EST:     CACACCCCACCGCCACTCGGCGCCGCCACCCCGCACCAG                         GTAAGGGAGGAGGAGTAAGAAGATGTCGCACAGGAAGTTCGAGCACCCGAG
genomic: CACACCCCACCGCCACTCGGCGCCGCCACCCCGCACCAGgtaaccatct ... gattttgtagGTAAGGGAGGAGGAGTAAGAAGATGTCGCACAGGAAGTTCGAGCACCCGAG
EST: gi|88694145|gb|CI738183.1|CI738183
EST:     TCCACACACACCCCACCGCCACTCGGCGCCGCCACCCCGCACCAG                         GTAAGGGAGGAGGAGTAAGAAGATGTCGCACAGGAAGTTCGAGCACCCGAG
genomic: TCCACACACACCCCACCGCCACTCGGCGCCGCCACCCCGCACCAGgtaaccatct ... gattttgtagGTAAGGGAGGAGGAGTAAGAAGATGTCGCACAGGAAGTTCGAGCACCCGAG
EST: gi|88313070|gb|CI592354.1|CI592354
EST:     CCTCCACACACACCCCACCGCCACTCGGCGCCGCCACCCCGCACCAG                         GTAAGGGAGGAGGAGTAAGAAGATGTCGCACAGGAAGTTCGAGCACCCGAG
genomic: CCTCCACACACACCCCACCGCCACTCGGCGCCGCCACCCCGCACCAGgtaaccatct ... gattttgtagGTAAGGGAGGAGGAGTAAGAAGATGTCGCACAGGAAGTTCGAGCACCCGAG
EST: gi|86900861|gb|CI304066.1|CI304066
EST:     ACACCCCACCGCCACTCGGCGCCGCCACCCCGCACCAG                         GTAAGGGAGGAGGAGTAAGAAGATGTCGCACAGGAAGTTCGAGCACCCGAG
genomic: ACACCCCACCGCCACTCGGCGCCGCCACCCCGCACCAGgtaaccatct ... gattttgtagGTAAGGGAGGAGGAGTAAGAAGATGTCGCACAGGAAGTTCGAGCACCCGAG
EST: gi|58600288|gb|CK010816.1|CK010816
EST:     ACACACCCCACCGCCACTCGGCGCCGCCACCCCGCACCAG                         GTAAGGGAGGAGGAGTAAGAAGATGTCGCACAGGAAGTTCGAGCACCCGAG
genomic: ACACACCCCACCGCCACTCGGCGCCGCCACCCCGCACCAGgtaaccatct ... gattttgtagGTAAGGGAGGAGGAGTAAGAAGATGTCGCACAGGAAGTTCGAGCACCCGAG
EST: gi|58609648|gb|CK037681.1|CK037681
EST:     GGCGCCGCCACCCCGCACCAG                         GTAAGGGAGGAGGAGTAAGAAGATGTCGCACAGGAAGTTCGAGCACCCGAG
genomic: GGCGCCGCCACCCCGCACCAGgtaaccatct ... gattttgtagGTAAGGGAGGAGGAGTAAGAAGATGTCGCACAGGAAGTTCGAGCACCCGAG
EST: gi|58653344|gb|CK042024.1|CK042024
EST:     CACCGCCACTCGGCGCCG-CACCCCGCACCAG                         GTAAGGGAGGAGGAGTAAGAAGAGGGCGCACAGGAAGTTCGAGCACCCGAG
genomic: CACCGCCACTCGGCGCCGCCACCCCGCACCAGgtaaccatct ... gattttgtagGTAAGGGAGGAGGAGTAAGAAGATGTCGCACAGGAAGTTCGAGCACCCGAG
EST: gi|88741934|gb|CI764439.1|CI764439
EST:     TCCACACACACCCCACCGCCACTCGGCGCCGCCACCCCGCACCAG                         GTAAGGGAGGAGGAGTAAGAAGATGTCGCACAGGAAGTTCGAGCACCCGAG
genomic: TCCACACACACCCCACCGCCACTCGGCGCCGCCACCCCGCACCAGgtaaccatct ... gattttgtagGTAAGGGAGGAGGAGTAAGAAGATGTCGCACAGGAAGTTCGAGCACCCGAG
EST: gi|88693250|gb|CI736825.1|CI736825
EST:     TCCACACACACCCCACCGCCACTCGGCGCCGCCACCCCGCACCAG                         GTAAGGGAGGAGGAGTAAGAAGATGTCGCACAGGAAGTTCGAGCACCCGAG
genomic: TCCACACACACCCCACCGCCACTCGGCGCCGCCACCCCGCACCAGgtaaccatct ... gattttgtagGTAAGGGAGGAGGAGTAAGAAGATGTCGCACAGGAAGTTCGAGCACCCGAG
EST: gi|88311980|gb|CI580145.1|CI580145
EST:     GCCTCCACACAAACCCCACCGCCACTCGGCGCCGCCACCCCGCACCAG                         GTAAGGGAGGAGGAGTAAGAAGATGTCGCACAGGAAGTTCGAGCACCCGAG
genomic: GCCTCCACACACACCCCACCGCCACTCGGCGCCGCCACCCCGCACCAGgtaaccatct ... gattttgtagGTAAGGGAGGAGGAGTAAGAAGATGTCGCACAGGAAGTTCGAGCACCCGAG
EST: gi|88730974|gb|CI754587.1|CI754587
EST:     TCCACACACACCCCACCGCCACTCGGCGCCGCCACCCCGCACCAG                         GTAAGGGAGGAGGAGTAAGAAGATGTCGCACAGGAAGTTCGAGCACCCGAG
genomic: TCCACACACACCCCACCGCCACTCGGCGCCGCCACCCCGCACCAGgtaaccatct ... gattttgtagGTAAGGGAGGAGGAGTAAGAAGATGTCGCACAGGAAGTTCGAGCACCCGAG
EST: gi|58676606|gb|CK065293.1|CK065293
EST:     TCGGCGCCGCCACCCCGCACCAG                         GTAAGGGAGGAGGAGTAAGAAGATGTCGCACAGGAAGTTCGAGCACCCGAG
genomic: TCGGCGCCGCCACCCCGCACCAGgtaaccatct ... gattttgtagGTAAGGGAGGAGGAGTAAGAAGATGTCGCACAGGAAGTTCGAGCACCCGAG
EST: gi|88410507|gb|CI686442.1|CI686442
EST:     ACACACACCCCACCGCCACTCGGCGCCGCCACCCCGCACCAG                         GTAAGGGAGGAGGAGTAAGAAGATGTCGCACAGGAAGTTCGAGCACCCGAG
genomic: ACACACACCCCACCGCCACTCGGCGCCGCCACCCCGCACCAGgtaaccatct ... gattttgtagGTAAGGGAGGAGGAGTAAGAAGATGTCGCACAGGAAGTTCGAGCACCCGAG
EST: gi|88331902|gb|CI642127.1|CI642127
EST:     CCGCCTCCACACACACCCCACCGCCACTCGGCGCCGCCACCCCGCACCAG                         GTAAGGGAGGAGGAGTAAGAAGATGTCGCACAGGAAGTTCGAGCACCCGAG
genomic: CCGCCTCCACACACACCCCACCGCCACTCGGCGCCGCCACCCCGCACCAGgtaaccatct ... gattttgtagGTAAGGGAGGAGGAGTAAGAAGATGTCGCACAGGAAGTTCGAGCACCCGAG
EST: gi|86596787|gb|CI286700.1|CI286700
EST:     CACCCCGCACCAG                         GTAAGGGAGGAGGAGTAAGAAGATGTCGCACAGGAAGTTCGAGCACCCGAG
genomic: CACCCCGCACCAGgtaaccatct ... gattttgtagGTAAGGGAGGAGGAGTAAGAAGATGTCGCACAGGAAGTTCGAGCACCCGAG
EST: gi|86849484|gb|CI299684.1|CI299684
EST:     ACACACCCCACCGCCACTCGGCGCCGCCACCCCGCACCAG                         GTAAGGGAGGAGGAGTAAGAAGATGTCGCACAGGAAGTTCGAGCACCCGAG
genomic: ACACACCCCACCGCCACTCGGCGCCGCCACCCCGCACCAGgtaaccatct ... gattttgtagGTAAGGGAGGAGGAGTAAGAAGATGTCGCACAGGAAGTTCGAGCACCCGAG
EST: gi|58675932|gb|CK064619.1|CK064619
EST:     CACCGCCACTCGGCGCCGCCACCCCGCACCAG                         GTAAGGGAGGAGGAGTAAGAAGATGTCGCACAGGAAGTTCGAGCACCCGAG
genomic: CACCGCCACTCGGCGCCGCCACCCCGCACCAGgtaaccatct ... gattttgtagGTAAGGGAGGAGGAGTAAGAAGATGTCGCACAGGAAGTTCGAGCACCCGAG
EST: gi|88350282|gb|CI623220.1|CI623220
EST:     GCCTCCACACACACCCCACCGCCACTCGGCGCCGCCACCCCGCACCAG                         GTAAGGGAGGAGGAGTAAGAAGATGTCGCACAGGAAGTTCGAGCACCCGAG
genomic: GCCTCCACACACACCCCACCGCCACTCGGCGCCGCCACCCCGCACCAGgtaaccatct ... gattttgtagGTAAGGGAGGAGGAGTAAGAAGATGTCGCACAGGAAGTTCGAGCACCCGAG
EST: gi|88361677|gb|CI680248.1|CI680248
EST:     ACACACACCCCACCGCCACTCGGCGCCGCCACCCCGCACCAG                         GTAAGGGAGGAGGAGTAAGAAGATGTCGCACAGGAAGTTCGAGCACCCGAG
genomic: ACACACACCCCACCGCCACTCGGCGCCGCCACCCCGCACCAGgtaaccatct ... gattttgtagGTAAGGGAGGAGGAGTAAGAAGATGTCGCACAGGAAGTTCGAGCACCCGAG
EST: gi|33679189|gb|CF307428.1|CF307428
EST:     GCCACTCGGCGCCGCCACCCCGCACCAG                         GTAAGGGAGGAGGAGTAAGAAGATGTCGCACAGGAAGTTCGAGCACCCGAG
genomic: GCCACTCGGCGCCGCCACCCCGCACCAGgtaaccatct ... gattttgtagGTAAGGGAGGAGGAGTAAGAAGATGTCGCACAGGAAGTTCGAGCACCCGAG
EST: gi|88300542|gb|CI587346.1|CI587346
EST:     CCGCCTCCACACACACCCCACCGCCACTCGGCGCCGCCACCCCGCACCAG                         GTAAGGGAGGAGGAGTAAGAAGATGTCGCACAGGAAGTTCGAGCACCCGAG
genomic: CCGCCTCCACACACACCCCACCGCCACTCGGCGCCGCCACCCCGCACCAGgtaaccatct ... gattttgtagGTAAGGGAGGAGGAGTAAGAAGATGTCGCACAGGAAGTTCGAGCACCCGAG
EST: gi|218482116|gb|FG962264.1|FG962264
EST:     CCCCGCACCAG                         GTAAGGGAGGAGGAGTAAGAAGATGTCGCACAGGAAGTTCGAGCACCCGAG
genomic: CCCCGCACCAGgtaaccatct ... gattttgtagGTAAGGGAGGAGGAGTAAGAAGATGTCGCACAGGAAGTTCGAGCACCCGAG
EST: gi|58603721|gb|CK014249.1|CK014249
EST:     CTCGGCGCCGCCACCCCGCACCAG                         GTAAGGGAGGAGGAGTAAGAAGATGTCGCACAGGAAGTTCGAGCACCCGAG
genomic: CTCGGCGCCGCCACCCCGCACCAGgtaaccatct ... gattttgtagGTAAGGGAGGAGGAGTAAGAAGATGTCGCACAGGAAGTTCGAGCACCCGAG
EST: gi|88357181|gb|CI616068.1|CI616068
EST:     ACACACACCCCACCGCCACTCGGCGCCGCCACCCCGCACCAG                         GTAAGGGAGGAGGAGTAAGAAGATGTCGCACAGGAAGTTCGAGCACCCGAG
genomic: ACACACACCCCACCGCCACTCGGCGCCGCCACCCCGCACCAGgtaaccatct ... gattttgtagGTAAGGGAGGAGGAGTAAGAAGATGTCGCACAGGAAGTTCGAGCACCCGAG
EST: gi|88729780|gb|CI753290.1|CI753290
EST:     ACACACACCCCACCGCCACTCGGCGCCGCCACCCCGCACCAG                         GTAAGGGAGGAGGAGTAAGAAGATGTCGCACAGGAAGTTCGAGCACCCGAG
genomic: ACACACACCCCACCGCCACTCGGCGCCGCCACCCCGCACCAGgtaaccatct ... gattttgtagGTAAGGGAGGAGGAGTAAGAAGATGTCGCACAGGAAGTTCGAGCACCCGAG
EST: gi|88724306|gb|CI747565.1|CI747565
EST:     GCCTCCACACACACCCCACCGCCACTCGGCGCCGCCACCCCGCACCAG                         GTAAGGGAGGAGGAGTAAGAAGATGTCGCACAGGAAGTTCGAGCACCCGAG
genomic: GCCTCCACACACACCCCACCGCCACTCGGCGCCGCCACCCCGCACCAGgtaaccatct ... gattttgtagGTAAGGGAGGAGGAGTAAGAAGATGTCGCACAGGAAGTTCGAGCACCCGAG
EST: gi|88363127|gb|CI616284.1|CI616284
EST:     TCGGCGCCGCCACCCCGCACCAG                         GTAAGGGAGGAGGAGTAAGAAGATGTCGCACAGGAAGTTCGAGCACCCGAG
genomic: TCGGCGCCGCCACCCCGCACCAGgtaaccatct ... gattttgtagGTAAGGGAGGAGGAGTAAGAAGATGTCGCACAGGAAGTTCGAGCACCCGAG
EST: gi|88720961|gb|CI744260.1|CI744260
EST:     TCCACACACACCCCACCGCCACTCGGCGCCGCCACCCCGCACCAG                         GTAAGGGAGGAGGAGTAAGAAGATGTCGCACAGGAAGTTCGAGCACCCGAG
genomic: TCCACACACACCCCACCGCCACTCGGCGCCGCCACCCCGCACCAGgtaaccatct ... gattttgtagGTAAGGGAGGAGGAGTAAGAAGATGTCGCACAGGAAGTTCGAGCACCCGAG
EST: gi|218485063|gb|FG949964.1|FG949964
EST:     CACCGCCACTCGGCGCCGCCACCCCGCACCAG                         GCTAAGGGAGGAGGAGTAAGAAGATGTCGCACAGGAAGTTCGAGCACCCGA
genomic: CACCGCCACTCGGCGCCGCCACCCCGCACCAGgtaaccatct ... gattttgtagG-TAAGGGAGGAGGAGTAAGAAGATGTCGCACAGGAAGTTCGAGCACCCGA
EST: gi|33795951|gb|CF323843.1|CF323843
EST:     GCCGCCACCCCGCACCAG                         GTAAGGGAGGAGGAGTAAGAAGATGTCGCACAGGAAGTTCGAGCACCCGAG
genomic: GCCGCCACCCCGCACCAGgtaaccatct ... gattttgtagGTAAGGGAGGAGGAGTAAGAAGATGTCGCACAGGAAGTTCGAGCACCCGAG
EST: gi|88396672|gb|CI620005.1|CI620005
EST:     CCACACACACCCCACCGCCACTCGGCGCCGCCACCCCGCACCAG                         GTAAGTGGAGGAGGAGTAAGAAGATGTCGCACAGGAAGTTCGAGCACCCGA
genomic: CCACACACACCCCACCGCCACTCGGCGCCGCCACCCCGCACCAGgtaaccatct ... gattttgtagGTAAG-GGAGGAGGAGTAAGAAGATGTCGCACAGGAAGTTCGAGCACCCGA
EST: gi|58605935|gb|CK033968.1|CK033968
EST:     CACCGCCACTCGGCGCCG-CACCCCGCACCAG                         GTAAGGGAGGAGGAGTAAGAAGATGTCGCACAGGAAGTTCGAGCACCCGAG
genomic: CACCGCCACTCGGCGCCGCCACCCCGCACCAGgtaaccatct ... gattttgtagGTAAGGGAGGAGGAGTAAGAAGATGTCGCACAGGAAGTTCGAGCACCCGAG
EST: gi|88724217|gb|CI747476.1|CI747476
EST:     TCCACACACACCCCACCGCCACTCGGCGCCGCCACCCCGCACCAG                         GTAAGGGAGGAGGAGTAAGAAGATGTCGCACAGGAAGTTCGAGCACCCGAG
genomic: TCCACACACACCCCACCGCCACTCGGCGCCGCCACCCCGCACCAGgtaaccatct ... gattttgtagGTAAGGGAGGAGGAGTAAGAAGATGTCGCACAGGAAGTTCGAGCACCCGAG
EST: gi|58591646|gb|CF989954.1|CF989954
EST:     CACTCGGCGCCGCCACCCCGCACCAG                         GTAAGGGAGGAGGAGTAAGAAGATGTCGCAGAGGAAGTTCGAGCACCCGAG
genomic: CACTCGGCGCCGCCACCCCGCACCAGgtaaccatct ... gattttgtagGTAAGGGAGGAGGAGTAAGAAGATGTCGCACAGGAAGTTCGAGCACCCGAG
EST: gi|55434864|gb|CV730557.1|CV730557
EST:     ACACACCCCACCGCCACTCGGCGCCGCCACCCCGCACCAG                         GTAAGGGAGGAGGAGTAAGAAGATGTCGCACAGGAAGTTCGAGCACCCGAG
genomic: ACACACCCCACCGCCACTCGGCGCCGCCACCCCGCACCAGgtaaccatct ... gattttgtagGTAAGGGAGGAGGAGTAAGAAGATGTCGCACAGGAAGTTCGAGCACCCGAG
EST: gi|88315915|gb|CI618791.1|CI618791
EST:     GCCTCCACACACACCCCACCGCCACTCGGCGCCGCCACCCCGCACCAG                         GTAAGGGAGGAGGAGTAAGAAGATGTCGCACAGGAAGTTCGAGCACCCGAG
genomic: GCCTCCACACACACCCCACCGCCACTCGGCGCCGCCACCCCGCACCAGgtaaccatct ... gattttgtagGTAAGGGAGGAGGAGTAAGAAGATGTCGCACAGGAAGTTCGAGCACCCGAG
EST: gi|88312287|gb|CI582625.1|CI582625
EST:     ACACACACCCCACCGCCACTCGGCGCCGCCACCCCGCACCAG                         GTAAGGGAGGAGGAGTAAGAAGATGTCGCACAGGAAGTTCGAGCACCCGAG
genomic: ACACACACCCCACCGCCACTCGGCGCCGCCACCCCGCACCAGgtaaccatct ... gattttgtagGTAAGGGAGGAGGAGTAAGAAGATGTCGCACAGGAAGTTCGAGCACCCGAG
EST: gi|88408725|gb|CI686235.1|CI686235
EST:     ACACACACCCCACCGCCACTCGGCGCCGCCACCCCGCACCAG                         GTAAGGGAGGAGGAGTAAGAAGATGTCGCACAGGAAGTTCGAGCACCCGAG
genomic: ACACACACCCCACCGCCACTCGGCGCCGCCACCCCGCACCAGgtaaccatct ... gattttgtagGTAAGGGAGGAGGAGTAAGAAGATGTCGCACAGGAAGTTCGAGCACCCGAG
EST: gi|88420204|gb|CI621473.1|CI621473
EST:     CCGCCTCCACACACACCCCACCGCCACTCGGCGCCGCCACCCCGCACCAG                         GTAAGGGAGGAGGAGTAAGAAGATGTCGCAAAGGAAGTTCGAGCACCCGAG
genomic: CCGCCTCCACACACACCCCACCGCCACTCGGCGCCGCCACCCCGCACCAGgtaaccatct ... gattttgtagGTAAGGGAGGAGGAGTAAGAAGATGTCGCACAGGAAGTTCGAGCACCCGAG
EST: gi|33658130|gb|CF280744.1|CF280744
EST:     CACACCCCACCGCCACTCGGCGCCGCCACCCCGCACCAG                         GTAAGGGAGGAGGAGTAAGAAGATGTCGCACAGGAAGTTCGAGCACCCGAG
genomic: CACACCCCACCGCCACTCGGCGCCGCCACCCCGCACCAGgtaaccatct ... gattttgtagGTAAGGGAGGAGGAGTAAGAAGATGTCGCACAGGAAGTTCGAGCACCCGAG
EST: gi|88363762|gb|CI609119.1|CI609119
EST:     CCGCCTCCACACACACCCCACCGCCACTCGGCGCCGCCACCCCGCACCAG                         GTAAGGGAGGAGGAGTAAGAAGATGTCGCACAGGAAGTTCGAGCACCCGAG
genomic: CCGCCTCCACACACACCCCACCGCCACTCGGCGCCGCCACCCCGCACCAGgtaaccatct ... gattttgtagGTAAGGGAGGAGGAGTAAGAAGATGTCGCACAGGAAGTTCGAGCACCCGAG
EST: gi|58593252|gb|CF991560.1|CF991560
EST:     CGCCACTCGGCGCCGCCACCCCGCACCAG                         GTAAGGGAGGAGGAGTAAGAAGATGTCGCACAGGAAGTTCGAGCACCCGAG
genomic: CGCCACTCGGCGCCGCCACCCCGCACCAGgtaaccatct ... gattttgtagGTAAGGGAGGAGGAGTAAGAAGATGTCGCACAGGAAGTTCGAGCACCCGAG
EST: gi|29689626|gb|CB685901.1|CB685901
EST:     CGCCACTCGGCGCCGCCACCCCGCACCAG                         GTAAGGGAGGAGGAGTAAGAAGATGTCGCACAGGAAGTTCGAGCACCCGAG
genomic: CGCCACTCGGCGCCGCCACCCCGCACCAGgtaaccatct ... gattttgtagGTAAGGGAGGAGGAGTAAGAAGATGTCGCACAGGAAGTTCGAGCACCCGAG
EST: gi|88575550|gb|CI669695.1|CI669695
EST:     TCCACACACACCCCACCGCCACTCGGCGCCGCCACCCCGCACCAG                         GTAAGGGAGGAGGAGTAAGAAGATGTCGCACAGGAAGTTCGAGCACCCGAG
genomic: TCCACACACACCCCACCGCCACTCGGCGCCGCCACCCCGCACCAGgtaaccatct ... gattttgtagGTAAGGGAGGAGGAGTAAGAAGATGTCGCACAGGAAGTTCGAGCACCCGAG
EST: gi|88390011|gb|CI590524.1|CI590524
EST:     TCCACACACACCCCACCGCCACTCGGCGCCGCCACCCCGCACCAG                         GTAAGGGAGGAGGAGTAAGAAGATGTCGCACAGGAAGTTCGAGCACCCGAG
genomic: TCCACACACACCCCACCGCCACTCGGCGCCGCCACCCCGCACCAGgtaaccatct ... gattttgtagGTAAGGGAGGAGGAGTAAGAAGATGTCGCACAGGAAGTTCGAGCACCCGAG
EST: gi|88424517|gb|CI608103.1|CI608103
EST:     CTCCACACACACCCCACCGCCACTCGGCGCCGCCACCCCGCACCAG                         GTAAGGGAGGAGGAGTAAGAAGATGTCGCACAGGAAGTTCGAGCACCCGAG
genomic: CTCCACACACACCCCACCGCCACTCGGCGCCGCCACCCCGCACCAGgtaaccatct ... gattttgtagGTAAGGGAGGAGGAGTAAGAAGATGTCGCACAGGAAGTTCGAGCACCCGAG
EST: gi|88852054|gb|CI683572.1|CI683572
EST:     ACACACACCCCACCGCCACTCGGCGCCGCCACCCCGCACCAG                         GTAAGGGAGGAGGAGTAAGAAGATGTCGCACAGGAAGTTCGAGCACCCGAG
genomic: ACACACACCCCACCGCCACTCGGCGCCGCCACCCCGCACCAGgtaaccatct ... gattttgtagGTAAGGGAGGAGGAGTAAGAAGATGTCGCACAGGAAGTTCGAGCACCCGAG
EST: gi|58599474|gb|CK010002.1|CK010002
EST:     CCACTCGGCGCCGCCACCCCGCACCAG                         GTAAGGGAGGAGGAGTAAGAAGATGTCGCACAGGAAGTTCGAGCACCCGAG
genomic: CCACTCGGCGCCGCCACCCCGCACCAGgtaaccatct ... gattttgtagGTAAGGGAGGAGGAGTAAGAAGATGTCGCACAGGAAGTTCGAGCACCCGAG
EST: gi|88587703|gb|CI704415.1|CI704415
EST:     ACACACACCCCACCGCCACTCGGCGCCGCCACCCCGCACCAG                         GTAAGGGAGGAGGAGTAAGAAGATGTCGCACAGGAAGTTCGAGCACCCGAG
genomic: ACACACACCCCACCGCCACTCGGCGCCGCCACCCCGCACCAGgtaaccatct ... gattttgtagGTAAGGGAGGAGGAGTAAGAAGATGTCGCACAGGAAGTTCGAGCACCCGAG
EST: gi|33686141|gb|CF314380.1|CF314380
EST:     GCCTCCACACACACCCCACCGCCACTCGGCGCCGCCACCCCGCACCAG                         GTAAGGGAGGAGGAGTAAGAAGATGTCGCACAGGAAGTTCGAGCACCCGAG
genomic: GCCTCCACACACACCCCACCGCCACTCGGCGCCGCCACCCCGCACCAGgtaaccatct ... gattttgtagGTAAGGGAGGAGGAGTAAGAAGATGTCGCACAGGAAGTTCGAGCACCCGAG
EST: gi|218494740|gb|FG970602.1|FG970602
EST:     ACCCCGCA-CAG                         GT-AGGGAGGAGGAGTAAGAAGATGTCGCACAGGAAG-TCGAGCACCCGAG
genomic: ACCCCGCACCAGgtaaccatct ... gattttgtagGTAAGGGAGGAGGAGTAAGAAGATGTCGCACAGGAAGTTCGAGCACCCGAG
EST: gi|33793265|gb|CF322513.1|CF322513
EST:     CGCCACTCGGCGCCGCCACCCCGCACCAG                         GTAAGGGAGGAGGAGTAAGAAGATGTCGCACAGGAAGTTCGAGCACCCGAG
genomic: CGCCACTCGGCGCCGCCACCCCGCACCAGgtaaccatct ... gattttgtagGTAAGGGAGGAGGAGTAAGAAGATGTCGCACAGGAAGTTCGAGCACCCGAG
EST: gi|88725321|gb|CI748580.1|CI748580
EST:     TCCACACACACCCCACCGCCACTCGGCGCCGCCACCCCGCACCAG                         GTAAGGGAGGAGGAGTAAGAAGATGTCGCACAGGAAGTTCGAGCACCCGAG
genomic: TCCACACACACCCCACCGCCACTCGGCGCCGCCACCCCGCACCAGgtaaccatct ... gattttgtagGTAAGGGAGGAGGAGTAAGAAGATGTCGCACAGGAAGTTCGAGCACCCGAG
EST: gi|88428415|gb|CI564883.1|CI564883
EST:     GCCTCCACACACACCCCACCGCCACTCGGCGCCGCCACCCCGCACCAG                         GTAAGGGAGGAGGAGAAAGAAGATGTCGCACAGGAAGTTCGAGCACCCGAG
genomic: GCCTCCACACACACCCCACCGCCACTCGGCGCCGCCACCCCGCACCAGgtaaccatct ... gattttgtagGTAAGGGAGGAGGAGTAAGAAGATGTCGCACAGGAAGTTCGAGCACCCGAG
EST: gi|88316005|gb|CI618881.1|CI618881
EST:     ACACCCCACCGCCACTCGGCGCCGCCACCCCGCACCAG                         GTAAGGGAGGAGGAGTAAGAAGATGTCGCACAGGAAGTTCGAGCACCCGAG
genomic: ACACCCCACCGCCACTCGGCGCCGCCACCCCGCACCAGgtaaccatct ... gattttgtagGTAAGGGAGGAGGAGTAAGAAGATGTCGCACAGGAAGTTCGAGCACCCGAG
EST: gi|88589467|gb|CI707348.1|CI707348
EST:     ACACACACCCCACCGCCACTCGGCGCCGCCACCCCGCACCAG                         GTAAGGGAGGAGGAGTAAGAAGATGTCGCACAGGAAGTTCGAGCACCCGAG
genomic: ACACACACCCCACCGCCACTCGGCGCCGCCACCCCGCACCAGgtaaccatct ... gattttgtagGTAAGGGAGGAGGAGTAAGAAGATGTCGCACAGGAAGTTCGAGCACCCGAG
EST: gi|86832037|gb|CI305263.1|CI305263
EST:     ACACACCCCACCGCCACTCGGCGCCGCCACCCCGCACCAG                         GTAAGGGAGGAGGAGTAAGAAGATGTCGCACAGGAAGTTCGAGCACCCGAG
genomic: ACACACCCCACCGCCACTCGGCGCCGCCACCCCGCACCAGgtaaccatct ... gattttgtagGTAAGGGAGGAGGAGTAAGAAGATGTCGCACAGGAAGTTCGAGCACCCGAG
EST: gi|88579072|gb|CI688040.1|CI688040
EST:     ACACACACCCCACCGCCACTCGGCGCCGCCACCCCGCACCAG                         GTAAGGGAGGAGGAGTAAGAAGATGTCGCACAGGAAGTTCGAGCACCCGAG
genomic: ACACACACCCCACCGCCACTCGGCGCCGCCACCCCGCACCAGgtaaccatct ... gattttgtagGTAAGGGAGGAGGAGTAAGAAGATGTCGCACAGGAAGTTCGAGCACCCGAG
EST: gi|218504866|gb|FG963484.1|FG963484
EST:     CCACTCGGCGCCGCCACCCCGCACCAG                         GTAAGGGAGGAGGAGTAAGAAGATGTCGCACAGGAAGTTCGAGCACCCGAG
genomic: CCACTCGGCGCCGCCACCCCGCACCAGgtaaccatct ... gattttgtagGTAAGGGAGGAGGAGTAAGAAGATGTCGCACAGGAAGTTCGAGCACCCGAG
EST: gi|88396779|gb|CI620112.1|CI620112
EST:     CGCCTCCACACACACCCCACCGCCACTCGGCGCCGCCACCCCGCACCAG                         GTAAGGGAGGAGGAGTAAGAAGATGTCGCACAGGAAGTTCGAGCACCCGAG
genomic: CGCCTCCACACACACCCCACCGCCACTCGGCGCCGCCACCCCGCACCAGgtaaccatct ... gattttgtagGTAAGGGAGGAGGAGTAAGAAGATGTCGCACAGGAAGTTCGAGCACCCGAG
EST: gi|88330561|gb|CI635185.1|CI635185
EST:     ACCGCCACTCGGCGCCGCCACCCCGCACCAG                         GTAAGGGAGGAGGAGTAAGAAGATGTCGCACAGGAAGTTCGAGCACCCGAG
genomic: ACCGCCACTCGGCGCCGCCACCCCGCACCAGgtaaccatct ... gattttgtagGTAAGGGAGGAGGAGTAAGAAGATGTCGCACAGGAAGTTCGAGCACCCGAG
EST: gi|88720670|gb|CI743969.1|CI743969
EST:     ACACACACCCCACCGCCACTCGGCGCCGCCACCCCGCACCAG                         GTAAGGGAGGAGGAGTAAGAAGATGTCGCACAGGAAGTTCGAGCACCCGAG
genomic: ACACACACCCCACCGCCACTCGGCGCCGCCACCCCGCACCAGgtaaccatct ... gattttgtagGTAAGGGAGGAGGAGTAAGAAGATGTCGCACAGGAAGTTCGAGCACCCGAG
EST: gi|88366504|gb|CI610649.1|CI610649
EST:     GCCTCCACACACACCCCACCGCCACTCGGCGCCGCCACCCCGCACCAG                         GTAAGGGAGGAGGAGTAAGAAGATGTCGCACAGGAAGTTCGAGCACCCGAG
genomic: GCCTCCACACACACCCCACCGCCACTCGGCGCCGCCACCCCGCACCAGgtaaccatct ... gattttgtagGTAAGGGAGGAGGAGTAAGAAGATGTCGCACAGGAAGTTCGAGCACCCGAG
EST: gi|88307327|gb|CI641966.1|CI641966
EST:     ACCGCCACTCGGCGCCGCCACCCCGCACCAG                         GTAAGGGAGGAGGAGTAAGAAGATGTCGCACAGGAAGTTCGAGCACCCGAG
genomic: ACCGCCACTCGGCGCCGCCACCCCGCACCAGgtaaccatct ... gattttgtagGTAAGGGAGGAGGAGTAAGAAGATGTCGCACAGGAAGTTCGAGCACCCGAG
EST: gi|86901693|gb|CI310455.1|CI310455
EST:     CCGCCTCCACACACACCCCACCGCCACTCGGCGCCGCCACCCCGCACCAG                         GTAAGGGAGGAGGAGTAAGAAGATGTCGCACAGGAAGTTCGAGCACCCGAG
genomic: CCGCCTCCACACACACCCCACCGCCACTCGGCGCCGCCACCCCGCACCAGgtaaccatct ... gattttgtagGTAAGGGAGGAGGAGTAAGAAGATGTCGCACAGGAAGTTCGAGCACCCGAG
EST: gi|88351287|gb|CI623509.1|CI623509
EST:     GCCTCCACACACACCCCACCGCCACTCGGCGCCGCCACCCCGCACCAG                         GTAAGGGAGGAGGAGTAAGAAGATGTCGCACAGGAAGTTCGAGCACCCGAG
genomic: GCCTCCACACACACCCCACCGCCACTCGGCGCCGCCACCCCGCACCAGgtaaccatct ... gattttgtagGTAAGGGAGGAGGAGTAAGAAGATGTCGCACAGGAAGTTCGAGCACCCGAG
EST: gi|88724529|gb|CI747788.1|CI747788
EST:     ACACACACCCCACCGCCACTCGGCGCCGCCACCCCGCACCAG                         GTAAGGGAGGAGGAGTAAGAAGATGTCGCACAGGAAGTTCGAGCACCCGAG
genomic: ACACACACCCCACCGCCACTCGGCGCCGCCACCCCGCACCAGgtaaccatct ... gattttgtagGTAAGGGAGGAGGAGTAAGAAGATGTCGCACAGGAAGTTCGAGCACCCGAG
EST: gi|218483702|gb|FG965932.1|FG965932
EST:     CACACACCCCACCGCCACTCGGCGCCGCCACCCCGCACCAG                         GTAAGGGAGGAGGAGTAAGAAGATGTCGCACAGGAAGTTCGAGCACCCGAG
genomic: CACACACCCCACCGCCACTCGGCGCCGCCACCCCGCACCAGgtaaccatct ... gattttgtagGTAAGGGAGGAGGAGTAAGAAGATGTCGCACAGGAAGTTCGAGCACCCGAG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 74 (downstream exon)
Score: 120

AAGCGCTGTCCTAGGGTTTACCCTGCTCCGCCTCCACACACACCCCACCGCCACTCGGCGCCGCCACCCCGCACCAGgtaaccatct ... gattttgtagGTAAGGGAGGAGGAGTAAGAAGATGTCGCACAGGAAGTTCGAGCACCCGAGGCACGGATCCCTCGGCTTCCTCCCGAGGAAGCGCTCCTCCCGCCACCGC




<











<


<