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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCTGCTACCATCGGAGTCAGATCCATTCCTCCTCCCATTCTCGATCGCGAGGAGGAGGAGACCCCGCCCGCCAGCCACCCCGGATCCGTCGATCGCCATgtgggtactcctcctccgcgccttcttctctgcctcctcttcgctcgagcagcttctcgatctcgttgcgcgctgtttcttgccatccgtgtgaatgtat...

Basic information

species Oryza sativa
transcript LOC_Os11g06340.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86257972|gb|CI064325.1|CI064325
EST:     AGGAGGAGGAGACCCCGCCCGCCAGCCACCCCGGATCCGTCGATCGCCAT                         GGCGGATGAAGAACCTGTTGATCCAAAGAAGTACCTTGAGGAGCGCTGCAA
genomic: AGGAGGAGGAGACCCCGCCCGCCAGCCACCCCGGATCCGTCGATCGCCATgtgggtactc ... tttaccttagGGCGGATGAAGAACCTGTTGATCCAAAGAAGTACCTTGAGGAGCGCTGCAA
EST: gi|33807503|gb|CF329630.1|CF329630
EST:     AGGAGGAGGAGACCCCGCCCGCCAGCCACCCCGGATCCGTCGATCGCCAT                         GGCGGATGAAGAACCTGTTGATCCAAAGAAGTACCTTGAGGAGCGCTGCAA
genomic: AGGAGGAGGAGACCCCGCCCGCCAGCCACCCCGGATCCGTCGATCGCCATgtgggtactc ... tttaccttagGGCGGATGAAGAACCTGTTGATCCAAAGAAGTACCTTGAGGAGCGCTGCAA
EST: gi|58589455|gb|CF987763.1|CF987763
EST:     AGGAGGAGGAGACCCCGCCCGCCAGCCACCCCGGATCCGTCGATCGCCAT                         GGCGGATGAAGAACCTGTTGATCCAAAGAAGTACCTTGAGGAGCGCTGCAA
genomic: AGGAGGAGGAGACCCCGCCCGCCAGCCACCCCGGATCCGTCGATCGCCATgtgggtactc ... tttaccttagGGCGGATGAAGAACCTGTTGATCCAAAGAAGTACCTTGAGGAGCGCTGCAA
EST: gi|33690441|gb|CF318680.1|CF318680
EST:     AGGAGGAGGAGACCCCGCCCGCCAGCCACCCCGGATCCGTCGATCGCCAT                         GGCGGATGAAGAACCTGTTGATCCAAATAAGTACCTTGAGGAGCGCTGCAA
genomic: AGGAGGAGGAGACCCCGCCCGCCAGCCACCCCGGATCCGTCGATCGCCATgtgggtactc ... tttaccttagGGCGGATGAAGAACCTGTTGATCCAAAGAAGTACCTTGAGGAGCGCTGCAA
EST: gi|88578860|gb|CI687815.1|CI687815
EST:     AGGAGGAGGGGACCCCGCCCGCCAGCCACCCCGGATCCGTCGATCGCCAT                         GGCGGATGAAGAACCTGTTGATCCAAAGAAGTACCTTGAGGAGCGCTGCAA
genomic: AGGAGGAGGAGACCCCGCCCGCCAGCCACCCCGGATCCGTCGATCGCCATgtgggtactc ... tttaccttagGGCGGATGAAGAACCTGTTGATCCAAAGAAGTACCTTGAGGAGCGCTGCAA
EST: gi|88237379|gb|CI237228.1|CI237228
EST:     AGGAGGAGGAGACCCCGCCCGCCAGCCACCCCGGATCCGTCGATCGCCAT                         GGCGGATGAAGAACCTGTTGATCCAAAGAAGTACCTTGAGGAGCGCTGCAA
genomic: AGGAGGAGGAGACCCCGCCCGCCAGCCACCCCGGATCCGTCGATCGCCATgtgggtactc ... tttaccttagGGCGGATGAAGAACCTGTTGATCCAAAGAAGTACCTTGAGGAGCGCTGCAA
EST: gi|86831676|gb|CI301526.1|CI301526
EST:     AGGAGGAGGAGACCCCGCCCGCCAGCCACCCCGGATCCGTCGATCGCCAT                         GGCGGATGAAGAACCTGTTGATCCAAAGAAGTACCTTGAGGAGCGCTGCAA
genomic: AGGAGGAGGAGACCCCGCCCGCCAGCCACCCCGGATCCGTCGATCGCCATgtgggtactc ... tttaccttagGGCGGATGAAGAACCTGTTGATCCAAAGAAGTACCTTGAGGAGCGCTGCAA
EST: gi|88760923|gb|CI770479.1|CI770479
EST:     AGGAGGAGGAGACCCCGCCCGCCAGCCACCCCGGATCCGTCGATCGCCAT                         GGCGGATGAAGAACCTGTTGATCCAAAGAAGTACCTTGAGGAGCGCTGCAA
genomic: AGGAGGAGGAGACCCCGCCCGCCAGCCACCCCGGATCCGTCGATCGCCATgtgggtactc ... tttaccttagGGCGGATGAAGAACCTGTTGATCCAAAGAAGTACCTTGAGGAGCGCTGCAA
EST: gi|88340112|gb|CI650559.1|CI650559
EST:     AGGAGGAGGAGACCCCGCCCGCCAGCCACCCCGGATCCGTCGATCGCCAT                         GGCGGATGAAGAACCTGTTGATCCAAAGAAGTACCTTGAGGAGCGCTGCAA
genomic: AGGAGGAGGAGACCCCGCCCGCCAGCCACCCCGGATCCGTCGATCGCCATgtgggtactc ... tttaccttagGGCGGATGAAGAACCTGTTGATCCAAAGAAGTACCTTGAGGAGCGCTGCAA
EST: gi|88394026|gb|CI684295.1|CI684295
EST:     AGGAGGAGGAGACCCCGCCCGCCAGCCACCCCGGATCCGTCGATCGCCAT                         GGCGGATGAAGAACCTGTTGATCCAAAGAAGTACCTTGAGGAGCGCTGCAA
genomic: AGGAGGAGGAGACCCCGCCCGCCAGCCACCCCGGATCCGTCGATCGCCATgtgggtactc ... tttaccttagGGCGGATGAAGAACCTGTTGATCCAAAGAAGTACCTTGAGGAGCGCTGCAA
EST: gi|88353730|gb|CI634521.1|CI634521
EST:     AGGAGGAGGAGACCCCGCCCGCCAGCCACCCCGGATCCGTCGATCGCCAT                         GGCGGATGAAGAACCTGTTGATCCAAAGAAGTACCTTGAGGAGCGCTGCAA
genomic: AGGAGGAGGAGACCCCGCCCGCCAGCCACCCCGGATCCGTCGATCGCCATgtgggtactc ... tttaccttagGGCGGATGAAGAACCTGTTGATCCAAAGAAGTACCTTGAGGAGCGCTGCAA
EST: gi|88965741|gb|CI006620.1|CI006620
EST:     AGGAGGAGGAGACCCCGCCCGCCAGCCACCCCGGATCCGTCGATCGCCAT                         GGCGGATGAAGAACCTGTTGATCCAAAGAAGTACCTTGAGGAGCGCTGCAA
genomic: AGGAGGAGGAGACCCCGCCCGCCAGCCACCCCGGATCCGTCGATCGCCATgtgggtactc ... tttaccttagGGCGGATGAAGAACCTGTTGATCCAAAGAAGTACCTTGAGGAGCGCTGCAA
EST: gi|88987188|gb|CI034211.1|CI034211
EST:     AGGAGGAGGAGACCCCGCCCGCCAGCCACCCCGGATCCGTCGATCGCCAT                         GGCGGATGAAGAACCTGTTGATCCAAAGAAGTACCTTGAGGAGCGCTGCAA
genomic: AGGAGGAGGAGACCCCGCCCGCCAGCCACCCCGGATCCGTCGATCGCCATgtgggtactc ... tttaccttagGGCGGATGAAGAACCTGTTGATCCAAAGAAGTACCTTGAGGAGCGCTGCAA
EST: gi|88322729|gb|CI545435.1|CI545435
EST:     CCACCCCGGATCCGTCGATCGCCAT                         GGCGGATGAAGAACCTGTTGATCCAAAGAAGTACCTTGAGGAGCGCTGCAA
genomic: CCACCCCGGATCCGTCGATCGCCATgtgggtactc ... tttaccttagGGCGGATGAAGAACCTGTTGATCCAAAGAAGTACCTTGAGGAGCGCTGCAA
EST: gi|88995948|gb|CI037239.1|CI037239
EST:     AGGAGGAGGAGACCCCGCCCGCCAGCCACCCCGGATCCGTCGATCGCCAT                         GGCGGATGAAGAACCTGTTGATCCAAAGAAGTACCTTGAGGAGCGCTGCAA
genomic: AGGAGGAGGAGACCCCGCCCGCCAGCCACCCCGGATCCGTCGATCGCCATgtgggtactc ... tttaccttagGGCGGATGAAGAACCTGTTGATCCAAAGAAGTACCTTGAGGAGCGCTGCAA
EST: gi|109712066|gb|CI029236.1|CI029236
EST:     AGGAGGAGGAGACCCCGCCCGCCAGCCACCCCGGATCCGTCGATCGCCAT                         GGCGGATGAAGAACCTGTTGATCCAAAGAAGTACCTTGAGGAGCGCTGCAA
genomic: AGGAGGAGGAGACCCCGCCCGCCAGCCACCCCGGATCCGTCGATCGCCATgtgggtactc ... tttaccttagGGCGGATGAAGAACCTGTTGATCCAAAGAAGTACCTTGAGGAGCGCTGCAA
EST: gi|88408920|gb|CI554242.1|CI554242
EST:     AGGAGGAGGAGACCCCGCCCGCCAGCCACCCCGGATCCGTCGATCGCCAT                         GGCGGATGAAGAACCTGTTGATCCAAAGAAGTACCTTGAGGAGCGCTGCAA
genomic: AGGAGGAGGAGACCCCGCCCGCCAGCCACCCCGGATCCGTCGATCGCCATgtgggtactc ... tttaccttagGGCGGATGAAGAACCTGTTGATCCAAAGAAGTACCTTGAGGAGCGCTGCAA
EST: gi|88242700|gb|CI242549.1|CI242549
EST:     AGGAGGAGGAGACCCCGCCCGCCAGCCACCCCGGATCCGTCGATCGCCAT                         GGCGGATGAAGAACCTGTTGATCCAAAGAAGTACCTTGAGGAGCGCTGCAA
genomic: AGGAGGAGGAGACCCCGCCCGCCAGCCACCCCGGATCCGTCGATCGCCATgtgggtactc ... tttaccttagGGCGGATGAAGAACCTGTTGATCCAAAGAAGTACCTTGAGGAGCGCTGCAA
EST: gi|86888008|gb|CI296033.1|CI296033
EST:     AGGAGGAGGAGACCCCGCCCGCCAGCCACCCCGGATCCGTCGATCGCCAT                         GGCGGATGAAGAACCTGTTGATCCAAAGAAGTACCTTGAGGAGCGCTGCAA
genomic: AGGAGGAGGAGACCCCGCCCGCCAGCCACCCCGGATCCGTCGATCGCCATgtgggtactc ... tttaccttagGGCGGATGAAGAACCTGTTGATCCAAAGAAGTACCTTGAGGAGCGCTGCAA
EST: gi|12622845|gb|AU173058.1|AU173058
EST:     AGGAGGAGGAGACCCCGCCCGCCAGCCACCCCGGATCCGTCGATCGCCAT                         GGCGGATGAAGAACCTGTTGATCCAAAGAAGTACCTTGAGGAGCCGCTGCA
genomic: AGGAGGAGGAGACCCCGCCCGCCAGCCACCCCGGATCCGTCGATCGCCATgtgggtactc ... tttaccttagGGCGGATGAAGAACCTGTTGATCCAAAGAAGTACCTTGAGGAG-CGCTGCA
EST: gi|58671735|gb|CK060421.1|CK060421
EST:     AGGAGGAGGAGACCCCGCCCGCCAGCCACCCCGGATCCGTCGATCGCCAT                         GGCGGATGAAGAACCTGTTGATCCAAAGAAGTACCTTGAGGAGCGCTGCAA
genomic: AGGAGGAGGAGACCCCGCCCGCCAGCCACCCCGGATCCGTCGATCGCCATgtgggtactc ... tttaccttagGGCGGATGAAGAACCTGTTGATCCAAAGAAGTACCTTGAGGAGCGCTGCAA
EST: gi|163928761|gb|EG711898.1|EG711898
EST:     AGGAGGAGGAGACCCCGCCCGCCAGCCACCCCGGATCCGTCGATCGCCAT                         GGCGGATGAAGAACCTGTTGATCCAAAGAAGTACCTTGAGGAGCGCTGCAA
genomic: AGGAGGAGGAGACCCCGCCCGCCAGCCACCCCGGATCCGTCGATCGCCATgtgggtactc ... tttaccttagGGCGGATGAAGAACCTGTTGATCCAAAGAAGTACCTTGAGGAGCGCTGCAA
EST: gi|33687921|gb|CF316160.1|CF316160
EST:     AGGAGGAGGAGACCCCGCCCGCCAGCCACCCCGGATCCGTCGATCGCCAT                         GGCGGATGAAGAACCTGTTGATCCAAAGAAGTACCTTGAGGAGCGCTGCAA
genomic: AGGAGGAGGAGACCCCGCCCGCCAGCCACCCCGGATCCGTCGATCGCCATgtgggtactc ... tttaccttagGGCGGATGAAGAACCTGTTGATCCAAAGAAGTACCTTGAGGAGCGCTGCAA
EST: gi|88331301|gb|CI675630.1|CI675630
EST:     AGGAGGAGGAGACCCCGCCCGCCAGCCACCCCGGATCCGTCGATCGCCAT                         GGCGGATGAAGAACCTGTTGATCCAAAGAAGTACCTTGAGGAGCGCTGCAA
genomic: AGGAGGAGGAGACCCCGCCCGCCAGCCACCCCGGATCCGTCGATCGCCATgtgggtactc ... tttaccttagGGCGGATGAAGAACCTGTTGATCCAAAGAAGTACCTTGAGGAGCGCTGCAA
EST: gi|88325007|gb|CI645022.1|CI645022
EST:     AGGAGGAGGAGACCCCGCCCGCCAGCCACCCCGGATCCGTCGATCGCCAT                         GGCGGATGAAGAACCTGTTGATCCAAAGAAGTACCTTGAGGAGCGCTGCAA
genomic: AGGAGGAGGAGACCCCGCCCGCCAGCCACCCCGGATCCGTCGATCGCCATgtgggtactc ... tttaccttagGGCGGATGAAGAACCTGTTGATCCAAAGAAGTACCTTGAGGAGCGCTGCAA
EST: gi|88352834|gb|CI678860.1|CI678860
EST:     AGGAGGAGGGGACCCCGCCCGCCAGCCACCCCGGATCCGTCGATCGCCAT                         GGCGGATGAAGAACCTGTTGATCCAAAGAAGTACCTTGAGGAGCGCTGCAA
genomic: AGGAGGAGGAGACCCCGCCCGCCAGCCACCCCGGATCCGTCGATCGCCATgtgggtactc ... tttaccttagGGCGGATGAAGAACCTGTTGATCCAAAGAAGTACCTTGAGGAGCGCTGCAA
EST: gi|33657549|gb|CF280163.1|CF280163
EST:     GCCCGCCAGCCACCCCGGATCCGTCGATCGCCAT                         GGCGGATGAAGAACCTGTTGATCCAAAGAAGTACCTTGAGGAGCGCTGCAA
genomic: GCCCGCCAGCCACCCCGGATCCGTCGATCGCCATgtgggtactc ... tttaccttagGGCGGATGAAGAACCTGTTGATCCAAAGAAGTACCTTGAGGAGCGCTGCAA
EST: gi|88324915|gb|CI644926.1|CI644926
EST:     AGGAGGAGGAGACCCCGCCCGCCAGCCACCCCGGATCCGTCGATCGCCAT                         GGCGGATGAAGAACCTGTTGATCCAAAGAAGTACCTTGAGGAGCGCTGCAA
genomic: AGGAGGAGGAGACCCCGCCCGCCAGCCACCCCGGATCCGTCGATCGCCATgtgggtactc ... tttaccttagGGCGGATGAAGAACCTGTTGATCCAAAGAAGTACCTTGAGGAGCGCTGCAA
EST: gi|86524916|gb|CI165122.1|CI165122
EST:     AGGAGGAGGAGACCCCGCCCGTCAGCCACCCCGGATCCGTCGATCGCCAT                         GGCGGATGAAGAACCTGTTGATCCAAAGAAGTACCTTGAGGAGCGCTGCAA
genomic: AGGAGGAGGAGACCCCGCCCGCCAGCCACCCCGGATCCGTCGATCGCCATgtgggtactc ... tttaccttagGGCGGATGAAGAACCTGTTGATCCAAAGAAGTACCTTGAGGAGCGCTGCAA
EST: gi|33659343|gb|CF281956.1|CF281956
EST:     AGGAGGAGGAGACCCCGCCCGCCAGCCACCCCGGATCCGTCGATCGCCAT                         GGCGGATGAAGAACCTGTTGATCCAAAGAAGTACCTTGAGGAGCGCTGCAA
genomic: AGGAGGAGGAGACCCCGCCCGCCAGCCACCCCGGATCCGTCGATCGCCATgtgggtactc ... tttaccttagGGCGGATGAAGAACCTGTTGATCCAAAGAAGTACCTTGAGGAGCGCTGCAA
EST: gi|88578474|gb|CI687407.1|CI687407
EST:     AGGAGGAGGAGACCCCGCCCGCCAGCCACCCCGGATCCGTCGATCGCCAT                         GGCGGATGAAGAACCTGTTGATCCAAAGAAGTACCTTGAGGAGCGCTGCAA
genomic: AGGAGGAGGAGACCCCGCCCGCCAGCCACCCCGGATCCGTCGATCGCCATgtgggtactc ... tttaccttagGGCGGATGAAGAACCTGTTGATCCAAAGAAGTACCTTGAGGAGCGCTGCAA
EST: gi|88524690|gb|CI453633.1|CI453633
EST:     GGAGGAGGAGACCCCGCCCGCCAGCCACCCCGGATCCGTCGATCGCCAT                         GGCGGATGAAGAACCTGTTGATCCAAAGAAGTACCTTGAGGAGCGCTGCAA
genomic: GGAGGAGGAGACCCCGCCCGCCAGCCACCCCGGATCCGTCGATCGCCATgtgggtactc ... tttaccttagGGCGGATGAAGAACCTGTTGATCCAAAGAAGTACCTTGAGGAGCGCTGCAA
EST: gi|88356099|gb|CI627547.1|CI627547
EST:     AGGAGGAGGAGACCCCGCCCGCCAGCCACCCCGGATCCGTCGATCGCCAT                         GGCGGATGAAGAACCTGTTGATCCAAAGAAGTACCTTGAGGAGCGCTGCAA
genomic: AGGAGGAGGAGACCCCGCCCGCCAGCCACCCCGGATCCGTCGATCGCCATgtgggtactc ... tttaccttagGGCGGATGAAGAACCTGTTGATCCAAAGAAGTACCTTGAGGAGCGCTGCAA
EST: gi|55432260|gb|CV729150.1|CV729150
EST:     AGGAGGAGGAGACCCCGCCCGCCAGCCACCCCGGATCCGTCGATCGCCAT                         GGCGGATGAAGAACCTGTTGATCCAAAGAAGTACCTTGAGGAGCGCTGCAA
genomic: AGGAGGAGGAGACCCCGCCCGCCAGCCACCCCGGATCCGTCGATCGCCATgtgggtactc ... tttaccttagGGCGGATGAAGAACCTGTTGATCCAAAGAAGTACCTTGAGGAGCGCTGCAA
EST: gi|88738666|gb|CI762174.1|CI762174
EST:     AGGAGGAGGAGACCCCGCCCGCCAGCCACCCCGGATCCGTCGATCGCCAT                         GGCGGATGAAGAACCTGTTGATCCAAAGAAGTACCTTGAGGAGCGCTGCAA
genomic: AGGAGGAGGAGACCCCGCCCGCCAGCCACCCCGGATCCGTCGATCGCCATgtgggtactc ... tttaccttagGGCGGATGAAGAACCTGTTGATCCAAAGAAGTACCTTGAGGAGCGCTGCAA
EST: gi|88825393|gb|CI775958.1|CI775958
EST:     AGGAGGAGGAGACCCCGCCCGCCAGCCACCCCGGATCCGTCGATCGCCAT                         GGCGGATGAAGAACCTGTTGATCCAAAGAAGTACCTTGAGGAGCGCTGCAA
genomic: AGGAGGAGGAGACCCCGCCCGCCAGCCACCCCGGATCCGTCGATCGCCATgtgggtactc ... tttaccttagGGCGGATGAAGAACCTGTTGATCCAAAGAAGTACCTTGAGGAGCGCTGCAA
EST: gi|88241545|gb|CI241394.1|CI241394
EST:     AGGAGGAGGAGACCCCGCCCGCCAGCCACCCCGGATCCGTCGATCGCCAT                         GGCGGATGAAGAACCTGTTGATCCAAAGAAGTACCTTGAGGAGCGCTGCAA
genomic: AGGAGGAGGAGACCCCGCCCGCCAGCCACCCCGGATCCGTCGATCGCCATgtgggtactc ... tttaccttagGGCGGATGAAGAACCTGTTGATCCAAAGAAGTACCTTGAGGAGCGCTGCAA
EST: gi|33680974|gb|CF309213.1|CF309213
EST:     AGGAGGAGGAGACCCCGCCCGCCAGCCACCCCGGATCCGTCGATCGCCAT                         GGCGGATGAAGAACCTGTTGATCCAAAGAAGTACCTTGAGGAGCGCTGCAA
genomic: AGGAGGAGGAGACCCCGCCCGCCAGCCACCCCGGATCCGTCGATCGCCATgtgggtactc ... tttaccttagGGCGGATGAAGAACCTGTTGATCCAAAGAAGTACCTTGAGGAGCGCTGCAA
EST: gi|7652183|gb|AU089712.1|AU089712
EST:     AGGAGGAGGAGACCCCGCCCGCCAGCCACCCCGGATCCGTCGATCGCCAT                         GGCGGATGAAGAACCTGTTGATCCAAAGAAGTACCTTGAGGAGCGCTGCAA
genomic: AGGAGGAGGAGACCCCGCCCGCCAGCCACCCCGGATCCGTCGATCGCCATgtgggtactc ... tttaccttagGGCGGATGAAGAACCTGTTGATCCAAAGAAGTACCTTGAGGAGCGCTGCAA
EST: gi|88542848|gb|CI472202.1|CI472202
EST:     AGGAGGAGGAGACCCCGCCCGCCAGCCACCCCGGATCCGTCGATCGCCAT                         GGCGGATGAAGAACCTGTTGATCCAAAGAAGTACCTTGAGGAGCGCTGCAA
genomic: AGGAGGAGGAGACCCCGCCCGCCAGCCACCCCGGATCCGTCGATCGCCATgtgggtactc ... tttaccttagGGCGGATGAAGAACCTGTTGATCCAAAGAAGTACCTTGAGGAGCGCTGCAA
EST: gi|88992334|gb|CI035472.1|CI035472
EST:     AGGAGGAGGAGACCCCGCCCGCCAGCCACCCCGGATCCGTCGATCGCCAT                         GGCGGATGAAGAACCTGTTGATCCCAAGAAGTACCTTGAGGAGCGCTGCAA
genomic: AGGAGGAGGAGACCCCGCCCGCCAGCCACCCCGGATCCGTCGATCGCCATgtgggtactc ... tttaccttagGGCGGATGAAGAACCTGTTGATCCAAAGAAGTACCTTGAGGAGCGCTGCAA
EST: gi|33807505|gb|CF329631.1|CF329631
EST:     AGGAGGAGGAGACCCCGCCCGCCAGCCACCCCGGATCCGTCGATCGCCAT                         GGCGGATGAAGAACCTGTTGATCCAAAGAAGTACCTTGAGGAGCGCTGCAA
genomic: AGGAGGAGGAGACCCCGCCCGCCAGCCACCCCGGATCCGTCGATCGCCATgtgggtactc ... tttaccttagGGCGGATGAAGAACCTGTTGATCCAAAGAAGTACCTTGAGGAGCGCTGCAA
EST: gi|3760892|gb|C98146.1|C98146
EST:     AGGAGGAGGAGACCCCGCCCGCCAGCCACCCCGGATCCGTCGATCGCCAT                         GGCGGATGAAGAACCTGTTGATCCAAAGAAGTACCTTGAGGAGCGCTGCAA
genomic: AGGAGGAGGAGACCCCGCCCGCCAGCCACCCCGGATCCGTCGATCGCCATgtgggtactc ... tttaccttagGGCGGATGAAGAACCTGTTGATCCAAAGAAGTACCTTGAGGAGCGCTGCAA
EST: gi|427275|gb|D23358.1|D23358
EST:     AGGAGGAGGAGACCCCGCCCGCCAGCCACCCCGGATCCGTCGATCGCCAT                         GGCGGATGAAGAACCTGTTGATCCAAAGAAGTACCTTGAGGAGCGCTGCAA
genomic: AGGAGGAGGAGACCCCGCCCGCCAGCCACCCCGGATCCGTCGATCGCCATgtgggtactc ... tttaccttagGGCGGATGAAGAACCTGTTGATCCAAAGAAGTACCTTGAGGAGCGCTGCAA
EST: gi|8334651|gb|BE039635.1|BE039635
EST:     AGGAGGAGGAGACCCCGCCCGCCAGCCACCCCGGATCCGTCGATCGCCAT                         GGCGGATGAAGAACCTGTTGATCCAAAGAAGTACCTTGAGGAGCGCTGCAA
genomic: AGGAGGAGGAGACCCCGCCCGCCAGCCACCCCGGATCCGTCGATCGCCATgtgggtactc ... tttaccttagGGCGGATGAAGAACCTGTTGATCCAAAGAAGTACCTTGAGGAGCGCTGCAA
EST: gi|88366754|gb|CI558928.1|CI558928
EST:     AGGAGGAGGAGACCCCGCCCGCCAGCCACCCCGGATCCGTCGATCGCCAT                         GGCGGATGAAGAACCTGTTGATCCAAAGAAGTACCTTGAGGAGCGCTGCAA
genomic: AGGAGGAGGAGACCCCGCCCGCCAGCCACCCCGGATCCGTCGATCGCCATgtgggtactc ... tttaccttagGGCGGATGAAGAACCTGTTGATCCAAAGAAGTACCTTGAGGAGCGCTGCAA
EST: gi|33688858|gb|CF317097.1|CF317097
EST:     AGGAGGAGGAGACCCCGCCCGCCAGCCACCCCGGATCCGTCGATCGCCAT                         GGCGGATGAAGAACCTGTTGATCCAAAGAAGTACCTTGAGGAGCGCTGCAA
genomic: AGGAGGAGGAGACCCCGCCCGCCAGCCACCCCGGATCCGTCGATCGCCATgtgggtactc ... tttaccttagGGCGGATGAAGAACCTGTTGATCCAAAGAAGTACCTTGAGGAGCGCTGCAA
EST: gi|95101167|gb|CI692902.1|CI692902
EST:     AGGAGGAGGAGACCCCGCCCGCCAGCCACCCCGGATCCGTCGATCGCCAT                         GGCGGATGAAGAACCTGTTGATCCAAAGAAGTACCTTGAGGAGCGCTGCAA
genomic: AGGAGGAGGAGACCCCGCCCGCCAGCCACCCCGGATCCGTCGATCGCCATgtgggtactc ... tttaccttagGGCGGATGAAGAACCTGTTGATCCAAAGAAGTACCTTGAGGAGCGCTGCAA
EST: gi|88977156|gb|CI024893.1|CI024893
EST:     AGGAGGAGGAGACCCCGCCCGCCAGCCACCCCGGATCCGTCGATCGCCAT                         GGCGGATGAAGAACCTGTTGATCCAAAGAAGTACCTTGAGGAGCGCTGCAA
genomic: AGGAGGAGGAGACCCCGCCCGCCAGCCACCCCGGATCCGTCGATCGCCATgtgggtactc ... tttaccttagGGCGGATGAAGAACCTGTTGATCCAAAGAAGTACCTTGAGGAGCGCTGCAA
EST: gi|286736|gb|D15543.1|D15543
EST:     AGGAGGAGGAGACCCCGCCCGCCAGCCACCCCGGATCCGTCGATCGCCAT                         GGCGGATGAAGAACCTGTTGATCCAAAGAAGTACCTTGAGGAGCGCTGCAA
genomic: AGGAGGAGGAGACCCCGCCCGCCAGCCACCCCGGATCCGTCGATCGCCATgtgggtactc ... tttaccttagGGCGGATGAAGAACCTGTTGATCCAAAGAAGTACCTTGAGGAGCGCTGCAA
EST: gi|4714270|gb|AU058237.1|AU058237
EST:     AGGAGGAGGAGACCCCGCCCGCCAGCCACCCCGGATCCGTCGATCGCCAT                         GGCGGATGAAGAACCTGTTGATCCAAAGAAGTACCTTGAGGAGCGCTGCAA
genomic: AGGAGGAGGAGACCCCGCCCGCCAGCCACCCCGGATCCGTCGATCGCCATgtgggtactc ... tttaccttagGGCGGATGAAGAACCTGTTGATCCAAAGAAGTACCTTGAGGAGCGCTGCAA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 72 (upstream exon), 75 (downstream exon)
Score: 63

CTCTGCTACCATCGGAGTCAGATCCATTCCTCCTCCCATTCTCGATCGCGAGGAGGAGGAGACCCCGCCCGCCAGCCACCCCGGATCCGTCGATCGCCATgtgggtactc ... tttaccttagGGCGGATGAAGAACCTGTTGATCCAAAGAAGTACCTTGAGGAGCGCTGCAAGCCCCAGTGCGTAAAGCCACTCTATGAGTATGAG




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CTCTGCTACCATCGGAGTCAGATCCATTCCTCCTCCCATTCTCGATCGCGAGGAGGAGGAGACCCCGCCCGCCAGCCACCCCGGATCCGTCGATCGCCATgtgggtactcctcctccgcgccttcttctctgcctcctcttcgctcgagcagcttctcgatctcgttgcgcgctgtttcttgccatccgtgtgaatgtat

- - - - - - - - - - - - - - - - - - - - - - - - -  GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cctcctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cctccgc