1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
ACCATCACTGCGGCCGCCGGGGCGCACCCTCTCCGGCTTCCGCCGCCGAGCAGGGCTGCGCCGCCGTCGTGCTGCTTCCGCCGCAATCCCGGTGTCCGgtgagcatccatccccgtttatgcgcatcctcttcctcatctctctctacccacgcatgcgcttttttccccctcgaattcgcgttaaaccctagcctctcttctag
species | Oryza sativa |
transcript | LOC_Os11g05394.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: AGCAGGGCTGCGCCGCCGTCGTGCTGCTTCCGCCGCAATCCCGGTGTCCG ATCTGGACCCCAATGTCGCAAGTCAGATCCGCCCCTGAGCTGGACAGCCGTEST: gi|88314862|gb|CI608321.1|CI608321
genomic: AGCAGGGCTGCGCCGCCGTCGTGCTGCTTCCGCCGCAATCCCGGTGTCCGgtgagcatcc ... tctcttctagATCTGGACCCCAATGTCGCAAGTCAGATCCGCCCCTGAGCTGGACAGCCGT
EST: AGCAGGGCTGCGCCGCCGTCGTGCTGCTTCCGCCGCAATCCCGGTGTCCG ATCTGGACCCCAATGTCGCAAGTCAGATCCGCCCCTGAGCTGGACAGCCGT
genomic: AGCAGGGCTGCGCCGCCGTCGTGCTGCTTCCGCCGCAATCCCGGTGTCCGgtgagcatcc ... tctcttctagATCTGGACCCCAATGTCGCAAGTCAGATCCGCCCCTGAGCTGGACAGCCGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACCATCACTGCGGCCGCCGGGGCGCACCCTCTCCGGCTTCCGCCGCCGAGCAGGGCTGCGCCGCCGTCGTGCTGCTTCCGCCGCAATCCCGGTGTCCGgtgagcatccatccccgtttatgcgcatcctcttcctcatctctctctacccacgcatgcgcttttttccccctcgaattcgcgttaaaccctagcctctcttctag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - CGCCGCCG