Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|88981461|gb|CI027079.1|CI027079EST: GGATCGTCTCCACCGCCGGCGACATCGTCGGCTGAAAGGAGAAGCTCGAG GTGCGTTCAGTTTGGAAACCTCTCTGAAGATCCATGCCATCAGTTTGCATC
genomic: GGATCGTCTCCACCGCCGGCGACATCGTCGGCTGAAAGGAGAAGCTCGAGgtgaggtggt ... gatcgtgcagGTGCGTTCAGTTTGGAAACCTCTCTGAAGATCCATGCCATCAGTTTGCATC
EST:
gi|86529212|gb|CI169418.1|CI169418EST: GGATCGTCTCCACCGCCGGCGACATCGTCGGCTGAAAGGAGAAGCTCGAG GTGCGTTCAGTTTGGAAACCTCTCTGAAGATCCATGCCATCAGTTTGCATC
genomic: GGATCGTCTCCACCGCCGGCGACATCGTCGGCTGAAAGGAGAAGCTCGAGgtgaggtggt ... gatcgtgcagGTGCGTTCAGTTTGGAAACCTCTCTGAAGATCCATGCCATCAGTTTGCATC
EST:
gi|5667239|gb|AU077525.1|AU077525EST: GGATCGTCTCCACCGCCGGCGACATCGTCGGCTGAAAGGAGAAGCTCGAG GTGCGTTCAGTTTGGAAACCTCTCTGAAGATCCATGCCATCAGTTTGCATC
genomic: GGATCGTCTCCACCGCCGGCGACATCGTCGGCTGAAAGGAGAAGCTCGAGgtgaggtggt ... gatcgtgcagGTGCGTTCAGTTTGGAAACCTCTCTGAAGATCCATGCCATCAGTTTGCATC
EST:
gi|29683673|gb|CB679948.1|CB679948EST: GGATCGTCTCCACCGCCGGCGACATCGTCGGCTGAAAGGAGAAGCTCGAG GTGCGTTCAGTTTGGAAACCTCTCTGAAGATCCATGCCATCAGTTTGCATC
genomic: GGATCGTCTCCACCGCCGGCGACATCGTCGGCTGAAAGGAGAAGCTCGAGgtgaggtggt ... gatcgtgcagGTGCGTTCAGTTTGGAAACCTCTCTGAAGATCCATGCCATCAGTTTGCATC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GCGGGAGCCGGGGAGGTAGTGCGCCACCCGGGAGCAGACAGCTTGGAAATGGATCGTCTCCACCGCCGGCGACATCGTCGGCTGAAAGGAGAAGCTCGAGgtgaggtggtcgtctcgcccatttctacatgtaccttgtcccctcccaggaaaaggccgtgcaagttaatgccgtcatttctctctttcggttgcttaattcgtgtaggatccgttcctggtacttggaggattgaacagagtaatttagtgatcaatttgtgatgatgatcgtgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC