1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
AACCCAACCAAACCACCGTGCACGCGCGCGATGGCTGTGGTGGAGGAAGAAGAGGGCTCGCCGCCGGCACCCGCCGCCGCCGCCGATCCCGCCTCCTCTGgtgagcctcccttttctctcgcctgccccactctaccccgtaccagccccgcgtggctattgctctgtggatgtgctttgtttctgaatttcggtgtaga...
species | Oryza sativa |
transcript | LOC_Os11g05090.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GAGGGCTCGGCGCCGGCACCCGCCGCCCGC-GCCGATCCCGCCTCCCCTG GTTCAAGTGATAATGAAATAACTGTAEST: gi|88723673|gb|CI747183.1|CI747183
genomic: GAGGGCTCGCCGCCGGCACCCGCCGCC-GCCGCCGATCCCGCCTCCTCTGgtgagcctcc ... ggtttttcagGTTCAAGTGATAATGAGATAACTGTA
EST: AGAGGGCTCGCCGCCGGCACCCGCCGNCGCCGCCGATCCCGCCTCCTCTG GTTCAAGTGATAATGAGATAACTGTAGAGGAAGCTTCTTTTGTGCATACTGEST: gi|88590223|gb|CI709058.1|CI709058
genomic: AGAGGGCTCGCCGCCGGCACCCGCCGCCGCCGCCGATCCCGCCTCCTCTGgtgagcctcc ... ggtttttcagGTTCAAGTGATAATGAGATAACTGTAGAGGAAGCTTCTTTTGTGCATACTG
EST: GAGGGCTCGCCGCCGGNACCCCGC-GCCGCCGCCGATCCCGCCTCCTCTG GTTCAAGTGATAATGAGATAACTGTAGAGGAAGCTTCTTTTGTGCATACTG
genomic: GAGGGCTCGCCGCCGGCACCC-GCCGCCGCCGCCGATCCCGCCTCCTCTGgtgagcctcc ... ggtttttcagGTTCAAGTGATAATGAGATAACTGTAGAGGAAGCTTCTTTTGTGCATACTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AACCCAACCAAACCACCGTGCACGCGCGCGATGGCTGTGGTGGAGGAAGAAGAGGGCTCGCCGCCGGCACCCGCCGCCGCCGCCGATCCCGCCTCCTCTGgtgagcctcccttttctctcgcctgccccactctaccccgtaccagccccgcgtggctattgctctgtggatgtgctttgtttctgaatttcggtgtaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cctccct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctgcccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctacccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gccccgc