1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
CGTCCTCATGGGCAAGAACACCCTCATCCGCCGCTGCATCAAGGTGCACGCCGACAACACCGGCAACAAGGACTTCCTCGAGCTCATGCCCCTCCTCGTCgtaagttcaccttcttcttctttcttttttttttctttcccatgtacatgcctcgactcgactccacggtttttcttgacctgtttttcttgttgtttgtag
species | Oryza sativa |
transcript | LOC_Os11g04070.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CCGACAACACCGGCAACAAGGACTTCCTCGAGCTCATGCCCCTCCTCGTC GGTAACGTTGGTCTCATCTTCACCAAGGGTGACCTCAAGGAGGTCCGCGAGEST: gi|218484918|gb|FG943837.1|FG943837
genomic: CCGACAACACCGGCAACAAGGACTTCCTCGAGCTCATGCCCCTCCTCGTCgtaagttcac ... ttgtttgtagGGAAACGTTGGTCTCATCTTCACCAAGGGTGACCTCAAGGAGGTCCGCGAA
EST: CCGACAACACCGGCAACAAGGACTTCCTCGAGCTCATGCCCCTCCTCGTC GGAAACGTTGGTCTCATCTTCACCAAGGGTGACCTCAAGGAGGTCCGCGAA
genomic: CCGACAACACCGGCAACAAGGACTTCCTCGAGCTCATGCCCCTCCTCGTCgtaagttcac ... ttgtttgtagGGAAACGTTGGTCTCATCTTCACCAAGGGTGACCTCAAGGAGGTCCGCGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGTCCTCATGGGCAAGAACACCCTCATCCGCCGCTGCATCAAGGTGCACGCCGACAACACCGGCAACAAGGACTTCCTCGAGCTCATGCCCCTCCTCGTCgtaagttcaccttcttcttctttcttttttttttctttcccatgtacatgcctcgactcgactccacggtttttcttgacctgtttttcttgttgtttgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC