1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
AGCTCTAACACTATCGAAGCTTCACAAATTCAGTTGACGAATTGTAGCTGTTCTCTCTCGTCTCCAAGTGTTGGAGGCAAAGGAATCCTTCGATCCATAGgttcaaatctctctctcctccactcttctgaccctgatcttgttgtgcggttgaaatgttcgacgaaatgcctgagagaaccactctgctttcccttctg...
species | Oryza sativa |
transcript | LOC_Os11g03780.2 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TTCTCTCTCGTCTCCAAGTGTTGGAGGCAAAGGAATCCTTCGATCCATAGGCAGEST: gi|88405712|gb|CI609611.1|CI609611
genomic: TTCTCTCTCGTCTCCAAGTGTTGGAGGCAAAGGAATCCTTCGATCCAT----AGgttcaaatct ... cggcagg
EST: TTCTCTCTCGTCTCCAAGTGTTGGAGGCAAAGGAATCCTTCGATCCATAGGCAGEST: gi|88364204|gb|CI610548.1|CI610548
genomic: TTCTCTCTCGTCTCCAAGTGTTGGAGGCAAAGGAATCCTTCGATCCAT----AGgttcaaatct ... cggcagg
EST: TTCTCTCTCGTCTCCAAGTGTTGGAGGCAAAGGAATCCTTCGATCCATAGGCAGEST: gi|88695436|gb|CI737474.1|CI737474
genomic: TTCTCTCTCGTCTCCAAGTGTTGGAGGCAAAGGAATCCTTCGATCCAT----AGgttcaaatct ... cggcagg
EST: TTCTCTCTCGTCTCCAAGTGTTGGAGGCAAAGGAATCCTTCGATCCATAGGCAGEST: gi|88404761|gb|CI583568.1|CI583568
genomic: TTCTCTCTCGTCTCCAAGTGTTGGAGGCAAAGGAATCCTTCGATCCAT----AGgttcaaatct ... cggcagg
EST: TTCTCTCTCGTCTCCAAGTGTTGGAGGCAAAGGAATCCTTCGATCCATAGGCAGEST: gi|58671742|gb|CK060428.1|CK060428
genomic: TTCTCTCTCGTCTCCAAGTGTTGGAGGCAAAGGAATCCTTCGATCCAT----AGgttcaaatct ... cggcagg
EST: TTCTCTCTCGTCTCCAAGTGTTGGAGGCAAAGGAATCCTTCGATCCATAGGCAGEST: gi|88421573|gb|CI618697.1|CI618697
genomic: TTCTCTCTCGTCTCCAAGTGTTGGAGGCAAAGGAATCCTTCGATCCAT----AGgttcaaatct ... cggcagg
EST: TTCTCTCTCGTCTCCAAGTGTTGGAGGCAAAGGAATCCTTCGATCCATAGGCAGEST: gi|88692709|gb|CI736284.1|CI736284
genomic: TTCTCTCTCGTCTCCAAGTGTTGGAGGCAAAGGAATCCTTCGATCCAT----AGgttcaaatct ... cggcagg
EST: TTCTCTCTCGTCTCCAAGTGTTGGAGGCAAAGGAATCCTTCGATCCATAGGCAGEST: gi|88718003|gb|CI741513.1|CI741513
genomic: TTCTCTCTCGTCTCCAAGTGTTGGAGGCAAAGGAATCCTTCGATCCAT----AGgttcaaatct ... cggcagg
EST: TTCTCTCTCGTCTCCAAGTGTTGGAGGCAAAGGAATCCTTCGATCCATAGGCAGEST: gi|88314645|gb|CI606713.1|CI606713
genomic: TTCTCTCTCGTCTCCAAGTGTTGGAGGCAAAGGAATCCTTCGATCCAT----AGgttcaaatct ... cggcagg
EST: TTCTCTCTCGTCTCCAAGTGTTGGAGGCAAAGGAATCCTTCGATCCATAGGCAGEST: gi|88731532|gb|CI755145.1|CI755145
genomic: TTCTCTCTCGTCTCCAAGTGTTGGAGGCAAAGGAATCCTTCGATCCAT----AGgttcaaatct ... cggcagg
EST: TTCTCTCTCGTCTCCAAGTGTTGGAGGCAAAGGAATCCTTCGATCCATAGGCAGEST: gi|88723938|gb|CI745635.1|CI745635
genomic: TTCTCTCTCGTCTCCAAGTGTTGGAGGCAAAGGAATCCTTCGATCCAT----AGgttcaaatct ... cggcagg
EST: TTCTCTCTCGTCTCCAAGTGTTGGAGGCAAAGGAATCCTTCGATCCATAGGCAGEST: gi|88392471|gb|CI612945.1|CI612945
genomic: TTCTCTCTCGTCTCCAAGTGTTGGAGGCAAAGGAATCCTTCGATCCAT----AGgttcaaatct ... cggcagg
EST: TTCTCTCTCGTCTCCAAGTGTTGGAGGCAAAGGAATCCTTCGATCCATAGGCAGEST: gi|88372707|gb|CI612635.1|CI612635
genomic: TTCTCTCTCGTCTCCAAGTGTTGGAGGCAAAGGAATCCTTCGATCCAT----AGgttcaaatct ... cggcagg
EST: TTCTCTCTCGTCTCCAAGTGTTGGAGGCAAAGGAATCCTTCGATCCATAGGCAGEST: gi|88726971|gb|CI750626.1|CI750626
genomic: TTCTCTCTCGTCTCCAAGTGTTGGAGGCAAAGGAATCCTTCGATCCAT----AGgttcaaatct ... cggcagg
EST: TTCTCTCTCGTCTCCAAGTGTTGGAGGCAAAGGAATCCTTCGATCCATAGGCAGEST: gi|88314494|gb|CI604978.1|CI604978
genomic: TTCTCTCTCGTCTCCAAGTGTTGGAGGCAAAGGAATCCTTCGATCCAT----AGgttcaaatct ... cggcagg
EST: TTCTCTCTCGTCTCCAAGTGTTGGAGGCAAAGGAATCCTTCGATCCATAGGCAGEST: gi|88695959|gb|CI739534.1|CI739534
genomic: TTCTCTCTCGTCTCCAAGTGTTGGAGGCAAAGGAATCCTTCGATCCAT----AGgttcaaatct ... cggcagg
EST: TTCTCTCTCGTCTCCAAGTGTTGGAGGCAAAGGAATCCTTCGATCCATAGGCAGEST: gi|428871|gb|D25027.1|D25027
genomic: TTCTCTCTCGTCTCCAAGTGTTGGAGGCAAAGGAATCCTTCGATCCAT----AGgttcaaatct ... cggcagg
EST: TTCTCTCTCGTCTCCAAGTGTTGGAGGCAAAGGAATCCTTCGATCCATAG GACGCAGGACAGAGAATGGGTTTCGAAGAAACATATTTTTCTGCCTTCTGTEST: gi|88311923|gb|CI577529.1|CI577529
genomic: TTCTCTCTCGTCTCCAAGTGTTGGAGGCAAAGGAATCCTTCGATCCATAGgttcaaatct ... cggcaggcagGACGCAGGACAGAGAATGGGTTTCGAAGAAACATATTTTTCTGCCTTCTGT
EST: TTCTCTCTCGTCTCCAAGTGTTGGAGGCAAAGGAATCCTTCGATCCATAG GACGCAGGACAGAGAATGGGTTTCGAAGAAACATATTTTTCTGCCTTCTGTEST: gi|88721230|gb|CI744529.1|CI744529
genomic: TTCTCTCTCGTCTCCAAGTGTTGGAGGCAAAGGAATCCTTCGATCCATAGgttcaaatct ... cggcaggcagGACGCAGGACAGAGAATGGGTTTCGAAGAAACATATTTTTCTGCCTTCTGT
EST: TTCTCTCTCGTCTCCAAGTGTTGGAGGCAAAGGAATCCTTCGATCCATAGGCAGEST: gi|88719222|gb|CI742732.1|CI742732
genomic: TTCTCTCTCGTCTCCAAGTGTTGGAGGCAAAGGAATCCTTCGATCCAT----AGgttcaaatct ... cggcagg
EST: TTCTCTCTCGTCTCCAAGTGTTGGAGGCAAAGGAATCCTTCGATCCATAGGCAG
genomic: TTCTCTCTCGTCTCCAAGTGTTGGAGGCAAAGGAATCCTTCGATCCAT----AGgttcaaatct ... cggcagg
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGCTCTAACACTATCGAAGCTTCACAAATTCAGTTGACGAATTGTAGCTGTTCTCTCTCGTCTCCAAGTGTTGGAGGCAAAGGAATCCTTCGATCCATAGgttcaaatctctctctcctccactcttctgaccctgatcttgttgtgcggttgaaatgttcgacgaaatgcctgagagaaccactctgctttcccttctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctcctcc