1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GACAGACCCACCACCATCAAGAACATCAGGAGGAGAAGTAGATAGATGGGCAACTGCGGGACGCGAGAGGAGAATGCCGTCGTTGCGGCGCACGCCCAAGgtattcttcgcttcctcggatttgatttcttgggggatttcccggtgattgttttcttgggatgctggttgttgggatgggatctcgggttggatgatct...
species | Oryza sativa |
transcript | LOC_Os11g02830.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CAACTGCGGGACGCGAGAGGAGAATGCCGTCGTTGCGGCGCACGCCC-A- ---AGCAGCTCCATTTGTTACAACATCCTGTCAAGAATGCTGTTGCAGAGAEST: gi|2317406|gb|C22460.1|C22460
genomic: CAACTGCGGGACGCGAGAGGAGAATGCCGTCGTTGCGGCGCACGCCCAAGgtattcttcg ... atcttctcagTTCAGCAGCTCCATTTGTTACAACATCCTGTCAAGAATGCTGTTGCAGAGA
EST: AACTGCGGGAACGCGAGAGGAGAATGCCGTCGTCGCGGCGCACGCCCAAG TTCAGCAGCTCCATTTGTTACAACATCCTGTCAAGAATGCTGTTGCAGAGA
genomic: AACTGCGGG-ACGCGAGAGGAGAATGCCGTCGTTGCGGCGCACGCCCAAGgtattcttcg ... atcttctcagTTCAGCAGCTCCATTTGTTACAACATCCTGTCAAGAATGCTGTTGCAGAGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GACAGACCCACCACCATCAAGAACATCAGGAGGAGAAGTAGATAGATGGGCAACTGCGGGACGCGAGAGGAGAATGCCGTCGTTGCGGCGCACGCCCAAGgtattcttcgcttcctcggatttgatttcttgggggatttcccggtgattgttttcttgggatgctggttgttgggatgggatctcgggttggatgatct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA