1 5' 3' | 2 5' 3' | 3 5' 3' |
CTGTGCCGCTCCTCCACGACGGGAAGCAGTAGGATGGAGGACTACAACACCGCCATGAAGAGAATGATGCGCAATCCCTACGAATACCACCACGATTTAGgtccgtaccaatcatttttcctcgtatacgcgcttttgatgctacctagataatgattccatttcgggatggggattgttaatttcgtcccgccgaaacg...
species | Oryza sativa |
transcript | LOC_Os11g02180.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CGCCATGAAGAGAATGATGCGCAATCCCTACGAATACCACCACGATTTAG GTATGAATTATGCTATCATAAGTGANAGCTTGATTGTTGGCTCACAACCTCEST: gi|58682003|gb|CK070690.1|CK070690
genomic: CGCCATGAAGAGAATGATGCGCAATCCCTACGAATACCACCACGATTTAGgtccgtacca ... tggaatgtagGTATGAATTATGCTATCATAAGTGATAGCTTGATTGTTGGCTCACAACCTC
EST: CGCCATGAAGAGAATGATGCGCAATCCCTACGAATACCACCACGATTTAG GTATGAATTATGCTATCATAAGTGATAGCTTGATTGTTGGCTCACAACCTC
genomic: CGCCATGAAGAGAATGATGCGCAATCCCTACGAATACCACCACGATTTAGgtccgtacca ... tggaatgtagGTATGAATTATGCTATCATAAGTGATAGCTTGATTGTTGGCTCACAACCTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTGTGCCGCTCCTCCACGACGGGAAGCAGTAGGATGGAGGACTACAACACCGCCATGAAGAGAATGATGCGCAATCCCTACGAATACCACCACGATTTAGgtccgtaccaatcatttttcctcgtatacgcgcttttgatgctacctagataatgattccatttcgggatggggattgttaatttcgtcccgccgaaacg
- - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gatgggg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tcccgcc