1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
TGCTGCAAGATCAGAGGCAGTGATGCGTGTTGGGGGCATTCCAATGCTACTGGACCTTGCAAGGTGTTCAAGGGAGAGTGCACAGTCAGAAGCAGCAAAGgtaatgatgtccattttagctgaatccctggatctaattgccgatatctactatgtttggtattaccattttcttacagttgttaatgtgacttcag
species | Oryza sativa |
transcript | LOC_Os10g41360.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TGGACCTTGCAAGGTGTTCAAGGGAGAGTGCACAGTCAGAAGCAGCAAAG GCTATTGCCAACTTATCGGTGAATGCCAAGGTTGCAAAGGCAGTTGCAGACEST: gi|87017043|gb|CI286179.1|CI286179
genomic: TGGACCTTGCAAGGTGTTCAAGGGAGAGTGCACAGTCAGAAGCAGCAAAGgtaatgatgt ... gtgacttcagGCTATTGCCAACTTATCGGTGAATGCCAAGGTTGCAAAGGCAGTTGCAGAC
EST: TGGACCTTGCAAGGTGTTCAAGGGAGAGTGCACAGTCAGAAGCAGCAAAG GCTATTGCCAACTTATCGGTGAATGCCAAGGTTGCAAAGGCAGTTGCAEST: gi|29627762|gb|CB632773.1|CB632773
genomic: TGGACCTTGCAAGGTGTTCAAGGGAGAGTGCACAGTCAGAAGCAGCAAAGgtaatgatgt ... gtgacttcagGCTATTGCCAACTTATCGGTGAATGCCAAGGTTGCAAAGGCAGTTGCA
EST: TGGACCTTGCAAGGTGTTCAAGGGAGAGTGCACAGTCAGAAGCAGCAAAG GCTATTGCCAACTTATCGGTGAATGCCAAGGTTGCAAAGGCAGTTGCAGACEST: gi|88414832|gb|CI604190.1|CI604190
genomic: TGGACCTTGCAAGGTGTTCAAGGGAGAGTGCACAGTCAGAAGCAGCAAAGgtaatgatgt ... gtgacttcagGCTATTGCCAACTTATCGGTGAATGCCAAGGTTGCAAAGGCAGTTGCAGAC
EST: TGGACCTTGCAAGGTGTTCAAGGGAGAGTGCACAGTCAGAAGCAGCAAAG GCTATTGCCAACTTATCGGTGAATGEST: gi|29635379|gb|CB640388.1|CB640388
genomic: TGGACCTTGCAAGGTGTTCAAGGGAGAGTGCACAGTCAGAAGCAGCAAAGgtaatgatgt ... gtgacttcagGCTATTGCCAACTTATCGGTGAATG
EST: TGGACCTTGCAAGGTGTTCAAGGGAGAGTGCACAGTCAGAAGCAGCAAAG GCTATTGCCAACTTATCGGTGAATGCCAAGGTTGCAAAGGCAGTTGCAGAC
genomic: TGGACCTTGCAAGGTGTTCAAGGGAGAGTGCACAGTCAGAAGCAGCAAAGgtaatgatgt ... gtgacttcagGCTATTGCCAACTTATCGGTGAATGCCAAGGTTGCAAAGGCAGTTGCAGAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGCTGCAAGATCAGAGGCAGTGATGCGTGTTGGGGGCATTCCAATGCTACTGGACCTTGCAAGGTGTTCAAGGGAGAGTGCACAGTCAGAAGCAGCAAAGgtaatgatgtccattttagctgaatccctggatctaattgccgatatctactatgtttggtattaccattttcttacagttgttaatgtgacttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG