1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
TCTCCTCTCCCCTCTCACTCCTCCCAAATCCCCTCCATTGCCTTCCTCGCTTCGCATCGCCGCTCCCGCCGCCGCCGTCGGGCTGCTCGCCGGCATTGGGgtaaggccggcctctctctccgggatcagcttctgctcttcccgttgtttgattgattgattgattgattttttttttggttttttgggtggggtttctg...
species | Oryza sativa |
transcript | LOC_Os10g40550.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TTCGCATCGCCGCTCCCGCCGCCGCCGTCGGGCTGCTCGCCGGCATTGGG TGTTGGTTGTGACCGTATACAATTATTGTTTTTGGAGCTGAGCGATCAGATEST: gi|88324905|gb|CI644916.1|CI644916
genomic: TTCGCATCGCCGCTCCCGCCGCCGCCGTCGGGCTGCTCGCCGGCATTGGGgtaaggccgg ... tctattgcagTGTTGGTTGTGACCGTATACAATTATTGTTTTTGGAGCTGAGCGATCAGAT
EST: TTCGCATCGCCGCTCCCGCCGCCGCCGTCGGGCTGCTCGCCGGCATTGGG TGTTGGTTGTGACCGTATACAATTATTGTTTTTGGAGCTGAGCGATCAGATEST: gi|2427258|gb|C71721.1|C71721
genomic: TTCGCATCGCCGCTCCCGCCGCCGCCGTCGGGCTGCTCGCCGGCATTGGGgtaaggccgg ... tctattgcagTGTTGGTTGTGACCGTATACAATTATTGTTTTTGGAGCTGAGCGATCAGAT
EST: TTCGCATCGCCGCTCCCGCCGCCGCCGTCGGGCTGCTCGCCGGCATTGGG TGTTGGTTGTNACCGTATACAATTATTGTTTTTGGAGCTGAGCGATCAGATEST: gi|88398594|gb|CI598559.1|CI598559
genomic: TTCGCATCGCCGCTCCCGCCGCCGCCGTCGGGCTGCTCGCCGGCATTGGGgtaaggccgg ... tctattgcagTGTTGGTTGTGACCGTATACAATTATTGTTTTTGGAGCTGAGCGATCAGAT
EST: TTCGCATCGCCGCTCCCGCCGCCGCCGTGGGGCTGCTCGCCGGCATTGGG TGTTGGTTGTGACCGTATACAATTATTGTTTTTGGAGCTGAGCGATCAGATEST: gi|88399766|gb|CI585685.1|CI585685
genomic: TTCGCATCGCCGCTCCCGCCGCCGCCGTCGGGCTGCTCGCCGGCATTGGGgtaaggccgg ... tctattgcagTGTTGGTTGTGACCGTATACAATTATTGTTTTTGGAGCTGAGCGATCAGAT
EST: TTCGCATCGCCGCTCCCGCCGCCGCCGTCGGGCTGCTCGCCGGCATTGGG TGTTGGTTGTGACCGTATACAATTATTGTTTTTGGAGCTGAGCGATCAGATEST: gi|88389558|gb|CI603057.1|CI603057
genomic: TTCGCATCGCCGCTCCCGCCGCCGCCGTCGGGCTGCTCGCCGGCATTGGGgtaaggccgg ... tctattgcagTGTTGGTTGTGACCGTATACAATTATTGTTTTTGGAGCTGAGCGATCAGAT
EST: TTCGCATCGCCGCTCCCGCCGCCGCCGTCGGGCTGCTCGCCGGCATTGGG TGTTGGTTGTGACCGTATACAATTATTGTTTTTGGAGCTGAGCGATCAGATEST: gi|88371042|gb|CI595154.1|CI595154
genomic: TTCGCATCGCCGCTCCCGCCGCCGCCGTCGGGCTGCTCGCCGGCATTGGGgtaaggccgg ... tctattgcagTGTTGGTTGTGACCGTATACAATTATTGTTTTTGGAGCTGAGCGATCAGAT
EST: TTCGCATCGCCGCTCCCGCCGCCGCCGTCGGGCTGCTCGCCGGCATTGGG TGTTGGTTGTGACCGTATACAATTATTGTTTTTGGAGCTGAGCGATCAGATEST: gi|88445058|gb|CI589536.1|CI589536
genomic: TTCGCATCGCCGCTCCCGCCGCCGCCGTCGGGCTGCTCGCCGGCATTGGGgtaaggccgg ... tctattgcagTGTTGGTTGTGACCGTATACAATTATTGTTTTTGGAGCTGAGCGATCAGAT
EST: TTCGCATCGCCGCTCCCGCCGCCGCCGTCGGGCTGCTCGCCGGCATTGGG TGTTGGTTGTGACCGTATACAATTATTGTTTTTGGAGCTGAGCGATCAGATEST: gi|218486399|gb|FG950830.1|FG950830
genomic: TTCGCATCGCCGCTCCCGCCGCCGCCGTCGGGCTGCTCGCCGGCATTGGGgtaaggccgg ... tctattgcagTGTTGGTTGTGACCGTATACAATTATTGTTTTTGGAGCTGAGCGATCAGAT
EST: TTCGCATCGCCGCTCCCGCCGCCGCCGTCGGGCTGCTCGCCGGCATTGGG TGTTGGTTGTGACCGTATACAATTATTGTTTTTGGAGCTGAGCGATCAGAT
genomic: TTCGCATCGCCGCTCCCGCCGCCGCCGTCGGGCTGCTCGCCGGCATTGGGgtaaggccgg ... tctattgcagTGTTGGTTGTGACCGTATACAATTATTGTTTTTGGAGCTGAGCGATCAGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCTCCTCTCCCCTCTCACTCCTCCCAAATCCCCTCCATTGCCTTCCTCGCTTCGCATCGCCGCTCCCGCCGCCGCCGTCGGGCTGCTCGCCGGCATTGGGgtaaggccggcctctctctccgggatcagcttctgctcttcccgttgtttgattgattgattgattgattttttttttggttttttgggtggggtttctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT