1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
CGGTGGCGGGGGGCGCCTCGGCGGCGCCGCCGCACCAGGCAGGTACCTGACGCAGGAGGAGCGGTGGATGGACCAGACCCTCGACCACTTCAACCCCACCgttgagtcccgatctcccaccaccgcctcctctttcggtttctcggttgaattggttgatccgcgctcttgttcagttcctcgtttttgctcttcgtgcg...
species | Oryza sativa |
transcript | LOC_Os10g36760.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CGCAGGAGGAGCGGTGGATGGACCAGACCCTCGACCACTTCAACCCCACC GACCATCGGCAATTCAAGCAGCGTTACTATGAATTCCTTGATTACTACCGAEST: gi|88732121|gb|CI757298.1|CI757298
genomic: CGCAGGAGGAGCGGTGGATGGACCAGACCCTCGACCACTTCAACCCCACCgttgagtccc ... ttcaatgcagGACCATCGGCAATTCAAGCAGCGTTACTATGAATTCCTTGATTACTACCGA
EST: CGCAGGAGGAGCGGTGGATGGACCAGACCCTCGACCACTTCAACCCCACC GACCATCGGCAATTCAAGCAGCGTTACTATGAATTCCTTGATTACTACCGAEST: gi|88738898|gb|CI762406.1|CI762406
genomic: CGCAGGAGGAGCGGTGGATGGACCAGACCCTCGACCACTTCAACCCCACCgttgagtccc ... ttcaatgcagGACCATCGGCAATTCAAGCAGCGTTACTATGAATTCCTTGATTACTACCGA
EST: CGCAGGAGGAGCGGTGGATGGACCAGACCCTCGACCACTTCAACCCCACC GACCATCGGCAATTCAAGCAGCGTTACTATGAATTCCTTGATTACTACCGAEST: gi|88731615|gb|CI755228.1|CI755228
genomic: CGCAGGAGGAGCGGTGGATGGACCAGACCCTCGACCACTTCAACCCCACCgttgagtccc ... ttcaatgcagGACCATCGGCAATTCAAGCAGCGTTACTATGAATTCCTTGATTACTACCGA
EST: CGCAGGAGGAGCGGTGGATGGACCAGACCCTCGACCACTTCAACCCCACC GACCATCGGCAATTCAAGCAGCGTTACTATGAATTCCTTGATTACTACCGAEST: gi|29635606|gb|CB640615.1|CB640615
genomic: CGCAGGAGGAGCGGTGGATGGACCAGACCCTCGACCACTTCAACCCCACCgttgagtccc ... ttcaatgcagGACCATCGGCAATTCAAGCAGCGTTACTATGAATTCCTTGATTACTACCGA
EST: CGCAGGAGGAGCGGTGGATGGACCANACCCTCGACCACTTCAACCCCACC GACCATCGGCAATTCAAGCAGCGTTACTATGAATTCCTTGATTACTACCGAEST: gi|88402336|gb|CI596197.1|CI596197
genomic: CGCAGGAGGAGCGGTGGATGGACCAGACCCTCGACCACTTCAACCCCACCgttgagtccc ... ttcaatgcagGACCATCGGCAATTCAAGCAGCGTTACTATGAATTCCTTGATTACTACCGA
EST: CGCAGGAGGAGCGGTGGATGGACCAGACCCTCGACCACTTCAACCCCACC GACCATCGGCAATTCAAGCAGCGTTACTATGAATTCCTTGATTAGTACCGAEST: gi|88312989|gb|CI592273.1|CI592273
genomic: CGCAGGAGGAGCGGTGGATGGACCAGACCCTCGACCACTTCAACCCCACCgttgagtccc ... ttcaatgcagGACCATCGGCAATTCAAGCAGCGTTACTATGAATTCCTTGATTACTACCGA
EST: CGCAGGAGGAGCGGTGGATGGACCAGACCCTCGACCACTTCAACCCCACC GACCATCGGCAATTCAAGCAGCGTTACTATGAATTCCTTGATTACTACCGAEST: gi|33797174|gb|CF324451.1|CF324451
genomic: CGCAGGAGGAGCGGTGGATGGACCAGACCCTCGACCACTTCAACCCCACCgttgagtccc ... ttcaatgcagGACCATCGGCAATTCAAGCAGCGTTACTATGAATTCCTTGATTACTACCGA
EST: CTCGACCACTTCAACCCCACC GACCATCGGCAATTCAAGCAGCGTTACTATGAATTCCTTGATTACTACCGAEST: gi|88720865|gb|CI744164.1|CI744164
genomic: CTCGACCACTTCAACCCCACCgttgagtccc ... ttcaatgcagGACCATCGGCAATTCAAGCAGCGTTACTATGAATTCCTTGATTACTACCGA
EST: CGCAGGAGGAGCGGTGGATGGACCAGACCCTCGACCACTTCAACCCCACC GACCATCGGNAATTCAAGCAGCGTTACTATGAATTCCTTGATTACTACCGAEST: gi|29678499|gb|CB674774.1|CB674774
genomic: CGCAGGAGGAGCGGTGGATGGACCAGACCCTCGACCACTTCAACCCCACCgttgagtccc ... ttcaatgcagGACCATCGGCAATTCAAGCAGCGTTACTATGAATTCCTTGATTACTACCGA
EST: CGCAGGAGGAGCGGTGGATGGACCAGACCCTCGACCACTTCAACCCCACC GACCATCGGCAATTCAAGCAGCGTTACTATGAATTCCTTGATTACTACCGAEST: gi|88315058|gb|CI610117.1|CI610117
genomic: CGCAGGAGGAGCGGTGGATGGACCAGACCCTCGACCACTTCAACCCCACCgttgagtccc ... ttcaatgcagGACCATCGGCAATTCAAGCAGCGTTACTATGAATTCCTTGATTACTACCGA
EST: CGCAGGAGGAGCGGTGGATGGACCAGACCCTCGACCACTTCAACCCCACC GACCATCGGCAATTCAAGCAGCGTTACTATGAATTCCTTGATTACTACCGAEST: gi|88745280|gb|CI768640.1|CI768640
genomic: CGCAGGAGGAGCGGTGGATGGACCAGACCCTCGACCACTTCAACCCCACCgttgagtccc ... ttcaatgcagGACCATCGGCAATTCAAGCAGCGTTACTATGAATTCCTTGATTACTACCGA
EST: CGCAGGAGGAGCGGTGGATGGACCAGACCCTCGACCACTTCAACCCCACC GACCATCGGCAATTCAAGCAGCGTTACTATGAATTCCTTGATTACTACCGAEST: gi|33794179|gb|CF322980.1|CF322980
genomic: CGCAGGAGGAGCGGTGGATGGACCAGACCCTCGACCACTTCAACCCCACCgttgagtccc ... ttcaatgcagGACCATCGGCAATTCAAGCAGCGTTACTATGAATTCCTTGATTACTACCGA
EST: GGACCAGACCCTCGACCACTTCAACCCCACC GACCATCGGCAATTCAAGCAGCGTTACTATGAATTCCTTGATTACTACCGA
genomic: GGACCAGACCCTCGACCACTTCAACCCCACCgttgagtccc ... ttcaatgcagGACCATCGGCAATTCAAGCAGCGTTACTATGAATTCCTTGATTACTACCGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGGTGGCGGGGGGCGCCTCGGCGGCGCCGCCGCACCAGGCAGGTACCTGACGCAGGAGGAGCGGTGGATGGACCAGACCCTCGACCACTTCAACCCCACCgttgagtcccgatctcccaccaccgcctcctctttcggtttctcggttgaattggttgatccgcgctcttgttcagttcctcgtttttgctcttcgtgcg
- - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccaccgc