1 5' 3' | 2 5' 3' | 3 5' 3' |
CGGCCGTGCCGGGGCTCACCGACGACCTCGTCGCGCTCATGATGGAGCCGCCGTTCCGCTCCTACCACCCGGACATCGTCCACGAGCCCGCCATCTACAGgtgcctcctccttcccctccctcccatggccgtaccgtactctgcttctcaattgagtctcgcctctgattccaaaccatacatgttgatgctttccttt...
species | Oryza sativa |
transcript | LOC_Os10g33270.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CCGTTCCGCTCCTACCACCCGGACATCGTCCACGAGCCCGCNATCTACAG ATTGAATGAAGCTGTTATGCATTTTGGAGAGAGCATCAAGGAAATTATCAAEST: gi|86535937|gb|CI176143.1|CI176143
genomic: CCGTTCCGCTCCTACCACCCGGACATCGTCCACGAGCCCGCCATCTACAGgtgcctcctc ... ttgcgctcagATTGAATGAAGCTGTTATGCATTTTGGAGAGAGCATCAAGGAAATTATCAA
EST: CCGTTCCGCTCCTACCACCCGGACATCGTCCACGAGCCCGCCATCTACAG ATTGAATGAAGCTGTTATGCATTTTGGAGAGAGCATCAAGGAAATTATCAAEST: gi|86254024|gb|CI058751.1|CI058751
genomic: CCGTTCCGCTCCTACCACCCGGACATCGTCCACGAGCCCGCCATCTACAGgtgcctcctc ... ttgcgctcagATTGAATGAAGCTGTTATGCATTTTGGAGAGAGCATCAAGGAAATTATCAA
EST: CCGTTCCGCTCCTACCACCCGGACATCGTCCACGAGCCCGCCATCTACAG ATTGAATGAAGCTGTTATGCATTTTGGAGAGAGCATCAAGGAAATTATCAAEST: gi|25798783|gb|CA754744.1|CA754744
genomic: CCGTTCCGCTCCTACCACCCGGACATCGTCCACGAGCCCGCCATCTACAGgtgcctcctc ... ttgcgctcagATTGAATGAAGCTGTTATGCATTTTGGAGAGAGCATCAAGGAAATTATCAA
EST: CCGTTCCGCTCCTACCACCCGGACATCGTCCACGAGCCCGCCATCTACAG ATTGAATGAAGCTGTTATGCATTTTGGAGAGAGCATCAAGGAAATTATCAAEST: gi|58693386|gb|CK082073.1|CK082073
genomic: CCGTTCCGCTCCTACCACCCGGACATCGTCCACGAGCCCGCCATCTACAGgtgcctcctc ... ttgcgctcagATTGAATGAAGCTGTTATGCATTTTGGAGAGAGCATCAAGGAAATTATCAA
EST: CCGTTCCGCTCCTACCACCCGGACATCGTCCACGAGCCCGCAATCTACAG ATTGAATGAAGCTGTTATGCATTTTGGAGAGAGCATCAAGGAAATTATCAAEST: gi|88463661|gb|CI696136.1|CI696136
genomic: CCGTTCCGCTCCTACCACCCGGACATCGTCCACGAGCCCGCCATCTACAGgtgcctcctc ... ttgcgctcagATTGAATGAAGCTGTTATGCATTTTGGAGAGAGCATCAAGGAAATTATCAA
EST: CCGTTCCGCTCCTACCACCCGGACATCGTCCACGAGCCCGCCATCTACAG ATTGAATGAAGCTGTTATGCATTTGGGAGAGAGCATCAAGGAAATTATCAAEST: gi|88578606|gb|CI687547.1|CI687547
genomic: CCGTTCCGCTCCTACCACCCGGACATCGTCCACGAGCCCGCCATCTACAGgtgcctcctc ... ttgcgctcagATTGAATGAAGCTGTTATGCATTTTGGAGAGAGCATCAAGGAAATTATCAA
EST: CCGTTCCGCTCCTACCACCCGGACATCGTCCACGAGCCCGCCATCTACAG ATTGAATGAAGCTGTTATGCATTTTGGAGAGAGCATCAAGGAAATTATCAAEST: gi|88514316|gb|CI441822.1|CI441822
genomic: CCGTTCCGCTCCTACCACCCGGACATCGTCCACGAGCCCGCCATCTACAGgtgcctcctc ... ttgcgctcagATTGAATGAAGCTGTTATGCATTTTGGAGAGAGCATCAAGGAAATTATCAA
EST: CTCCTACCACCCGGACATCGTCCACGAGCCCGCCATCTACAG ATTGAATGAAGCTGTTATGCATTTTGGAGAGAGCATCAAGGAAATTATCAAEST: gi|88979062|gb|CI025570.1|CI025570
genomic: CTCCTACCACCCGGACATCGTCCACGAGCCCGCCATCTACAGgtgcctcctc ... ttgcgctcagATTGAATGAAGCTGTTATGCATTTTGGAGAGAGCATCAAGGAAATTATCAA
EST: CCGTTCCGCTCCTACCACCCGGACATCGTCCACGAGCCCGCCATCTACAG ATTGAATGAAGCTGTTATGCATTTTGGAGAGAGCATCAAGGAAATTATCAAEST: gi|86418185|gb|CI032394.1|CI032394
genomic: CCGTTCCGCTCCTACCACCCGGACATCGTCCACGAGCCCGCCATCTACAGgtgcctcctc ... ttgcgctcagATTGAATGAAGCTGTTATGCATTTTGGAGAGAGCATCAAGGAAATTATCAA
EST: CCGTTCCGCTCCTACCACCCGGACATCGTCCACGAGCCCGCCATCTACAG ATTGAATGAAGCTGTTATGCATTTTGGAGAGAGCATCAAGGAAATTATCAAEST: gi|88998125|gb|CI038010.1|CI038010
genomic: CCGTTCCGCTCCTACCACCCGGACATCGTCCACGAGCCCGCCATCTACAGgtgcctcctc ... ttgcgctcagATTGAATGAAGCTGTTATGCATTTTGGAGAGAGCATCAAGGAAATTATCAA
EST: CCGGACATCGTCCACGAGCCCGCCATCTACAG ATTGAATGAAGCTGTTATGCATTTTGGAGAGAGCATCAAGGAAATTATCAAEST: gi|86855243|gb|CI265169.1|CI265169
genomic: CCGGACATCGTCCACGAGCCCGCCATCTACAGgtgcctcctc ... ttgcgctcagATTGAATGAAGCTGTTATGCATTTTGGAGAGAGCATCAAGGAAATTATCAA
EST: CCGTTCCGCTCCTACCACCCGGACATCGTCCACGAGCCCGCCATCTACAG ATTGAATGAAGCTGTTATGCATTTTGGAGAGAGCATCAAGGAAATTATCAAEST: gi|86533060|gb|CI173266.1|CI173266
genomic: CCGTTCCGCTCCTACCACCCGGACATCGTCCACGAGCCCGCCATCTACAGgtgcctcctc ... ttgcgctcagATTGAATGAAGCTGTTATGCATTTTGGAGAGAGCATCAAGGAAATTATCAA
EST: CCGCCATCTACAG ATTGAATGAAGCTGTTATGCATTTTGGAGAGAGCATCAAGGAAATTATCAA
genomic: CCGCCATCTACAGgtgcctcctc ... ttgcgctcagATTGAATGAAGCTGTTATGCATTTTGGAGAGAGCATCAAGGAAATTATCAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGGCCGTGCCGGGGCTCACCGACGACCTCGTCGCGCTCATGATGGAGCCGCCGTTCCGCTCCTACCACCCGGACATCGTCCACGAGCCCGCCATCTACAGgtgcctcctccttcccctccctcccatggccgtaccgtactctgcttctcaattgagtctcgcctctgattccaaaccatacatgttgatgctttccttt
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