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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCATCGGGGACTCCGGCGTCGGCAAGAGCAGCCTCCTCGTCAGCTTCGTCGTCGCCGCCGCCGCCGCCCACCTCGACGACGACATCGCTCCCACCATCGgtacgtacgtacgtgcccccccacatcactcccggacagatgcagcccaccgatcgccgtcgtagcttaccaccacaacgtacactagctgttcatccta...

Basic information

species Oryza sativa
transcript LOC_Os10g31830.2
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os10g31830.1 (Oryza sativa), 5'ss of exon 1
lower sequence: GRMZM5G809265_T01 (Zea mays), 5'ss of exon 1
---------CTCATCGGGGACTCCGGCGTCGGCAAGAGCAGCCTCCTCGTCAGCTTCGTCGTCGCCGCCGCCGCCGCCCACCTCGACGACGACATCGCTCCCACCATCGgtacgtacgtacgtgcccccccacatcactcccggacagatgcagcccaccgatcgccgtcgtagc-ttaccaccacaacgtaca-ctagctgttcatccta
         |||||||||||||| |||||||||||||||||||||||||||||||||||||         ||||| |||||||||||| ||||||||| |||||||||||||   |||  |  ||| |  |    | |  ||| ||     | || | | |  |  || |||| |   ||  || |   ||  | |  | |       |||
AAGATCCTGCTCATCGGGGACTCGGGCGTCGGCAAGAGCAGCCTCCTCGTCAGCTTCGTCG---------CCGCCTCCCACCTCGACGGCGACATCGCCCCCACCATCGgtat-cacgcccacgcctctgctgcgctccaccgtaccccctc-gctcgctgtccctcgccgtaccaccacgcccgccgtgtcgatcccgatagcaccacta

upper sequence: LOC_Os10g31830.1 (Oryza sativa), 5'ss of exon 1
lower sequence: GRMZM2G075051_T01 (Zea mays), 5'ss of exon 1
---------CTCATCGGGGACTCCGGCGTCGGCAAGAGCAGCCTCCTCGTCAGCTTCGTCGTCGCCGCCGCCGCCGCCCACCTCGACGACGACATCGCTCCCACCATCGgtacgtacgtacgt-gcccccccacatcactcccggacagatgcagcccaccgatcgccgt--cgtagcttaccaccacaacgtacactagctgttcatccta
         |||||||||||||| |||||||||||||||||||||||||||||||||||||         ||||| || ||||||||| ||||||||| |||||||||||||||  | | | | ||| | ||||  ||| ||  | |   ||| || | |||  | |||   | | |||  |  |  |       || | |    |   |  
AAGTTCCTCCTCATCGGGGACTCGGGCGTCGGCAAGAGCAGCCTCCTCGTCAGCTTCGTCG---------CCGCCTCCTACCTCGACGGCGACATCGCCCCCACCATCGgtacgc-catccatcgccacgccacgccacgccacgcctc-tgccgcgctccgcgctccgctccctcgctcgctgcttctcgccgtaccaccacgccgggcc-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88423584|gb|CI579296.1|CI579296
EST:     CGTCGCCGCCGCCGCCGCCCACCTCGACGACGACATCGCTCCCACCATCG                         GAGTGGATTTTAAGATCAAGTTCCTTACGATTGGTGGA
genomic: CGTCGCCGCCGCCGCCGCCCACCTCGACGACGACATCGCTCCCACCATCGgtacgtacgt ... tggttggcagGAGTGGATTTTAAGATCAAGTTCCTTACGATTGGTGGA
EST: gi|88399284|gb|CI618474.1|CI618474
EST:     CGTCGCCGCCGCCGCCGCCCACCTCGACGACGACATCGCTCCCACCATCG                         GAGTGGATTTTAAGATCAAGTTCCTTACGATTGGTGGAAAGAAATTGAAGC
genomic: CGTCGCCGCCGCCGCCGCCCACCTCGACGACGACATCGCTCCCACCATCGgtacgtacgt ... tggttggcagGAGTGGATTTTAAGATCAAGTTCCTTACGATTGGTGGAAAGAAATTGAAGC
EST: gi|58675259|gb|CK063946.1|CK063946
EST:     CGTCGCCGCCGCCGCCGCCCACCTCGACGACGACATCGCTCCCACCATCG                         GAGTGGATTTTAAGATCAAGTTCCTTACGATTGGTGGAAAGAAATTGAAGC
genomic: CGTCGCCGCCGCCGCCGCCCACCTCGACGACGACATCGCTCCCACCATCGgtacgtacgt ... tggttggcagGAGTGGATTTTAAGATCAAGTTCCTTACGATTGGTGGAAAGAAATTGAAGC
EST: gi|88345035|gb|CI625881.1|CI625881
EST:     CGTCGCCGCCGCCGCCGCCCACCTCGACGACGACATCGCTCCCACCATCG                         GAGTGGATTTTAAGATCAAGTTCCTTACGATTGGTGGAAAGAAATTGAAGC
genomic: CGTCGCCGCCGCCGCCGCCCACCTCGACGACGACATCGCTCCCACCATCGgtacgtacgt ... tggttggcagGAGTGGATTTTAAGATCAAGTTCCTTACGATTGGTGGAAAGAAATTGAAGC