1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
AGGAGGAGGAGGAGAAAAAGAAATCCAATCTTTTTCTTTTTTCTTCTTGTGTCAAGATGTCTTCCCCGAGCAAGCGCCGCGAGATGGACTTGATGAAGCTgtgaggatcttgtcctttatttatttattttttttggggggggggggggtggaattgtgtttttgcccggtttgattcttttctttctattggtggtctccatcgtctaatctgatgtgttgttgtttgttgttttgggggtggggggattggggattttcttggtttcttgttgttgcag
species | Oryza sativa |
transcript | LOC_Os10g31000.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GTCAAGATGTCTTCCCCGAGCAAGCGCCGCGAGATGGACTTGATGAAGCT GATGATGAGCGACTACAAGGTGGAGATGGTGAACGATGGGATGCAGGAGTTEST: gi|58659537|gb|CK048217.1|CK048217
genomic: GTCAAGATGTCTTCCCCGAGCAAGCGCCGCGAGATGGACTTGATGAAGCTgtgaggatct ... gttgttgcagGATGATGAGCGACTACAAGGTGGAGATGGTGAACGATGGGATGCAGGAGTT
EST: GTCAAGATGTCTTCCCCGAGCAAGCGCCGCGAGATGGAGTTGATGAAGCT GATGATGAGCGACTACAAGGTGGAGATGGTGAACGATGGGATGCAGGAGTTEST: gi|163926790|gb|EG715078.1|EG715078
genomic: GTCAAGATGTCTTCCCCGAGCAAGCGCCGCGAGATGGACTTGATGAAGCTgtgaggatct ... gttgttgcagGATGATGAGCGACTACAAGGTGGAGATGGTGAACGATGGGATGCAGGAGTT
EST: GTCAAGATGTCTTCCCCGAGCAAGCGCCGCGAGATGGACTTGATGAAGCT GATGATGAGCGACTACAAGGTGGAGATGGTGAACGATGGGATGCAGGAGTTEST: gi|27410240|gb|CA923310.1|CA923310
genomic: GTCAAGATGTCTTCCCCGAGCAAGCGCCGCGAGATGGACTTGATGAAGCTgtgaggatct ... gttgttgcagGATGATGAGCGACTACAAGGTGGAGATGGTGAACGATGGGATGCAGGAGTT
EST: CTTGATGAAGCT GATGATGAGCGACTACAAGGTGGAGATGGTGAACGATGGGATGCAGGAGTTEST: gi|163927163|gb|EG715184.1|EG715184
genomic: CTTGATGAAGCTgtgaggatct ... gttgttgcagGATGATGAGCGACTACAAGGTGGAGATGGTGAACGATGGGATGCAGGAGTT
EST: GTCAAGATGTCTT-CCCGAGCAAGCGCCGCGAGATGGACTTGATGAAGCT GATGATGAGCGACTACAAGGTGGAGATGGTGAACGATGGGATGCAGGAGTTEST: gi|86896481|gb|CI328868.1|CI328868
genomic: GTCAAGATGTCTTCCCCGAGCAAGCGCCGCGAGATGGACTTGATGAAGCTgtgaggatct ... gttgttgcagGATGATGAGCGACTACAAGGTGGAGATGGTGAACGATGGGATGCAGGAGTT
EST: GTCAAGATGTCTTTCCCGAGCAAGCGCCGCGAGATGGACTTGATGAAGCT GATGATGAGCGACTACAAGGTGGAGATGGTGAACGATGGGATGCAGGAGTT
genomic: GTCAAGATGTCTTCCCCGAGCAAGCGCCGCGAGATGGACTTGATGAAGCTgtgaggatct ... gttgttgcagGATGATGAGCGACTACAAGGTGGAGATGGTGAACGATGGGATGCAGGAGTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGGAGGAGGAGGAGAAAAAGAAATCCAATCTTTTTCTTTTTTCTTCTTGTGTCAAGATGTCTTCCCCGAGCAAGCGCCGCGAGATGGACTTGATGAAGCTgtgaggatcttgtcctttatttatttattttttttggggggggggggggtggaattgtgtttttgcccggtttgattcttttctttctattggtggtctccatcgtctaatctgatgtgttgttgtttgttgttttgggggtggggggattggggattttcttggtttcttgttgttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC