1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
CTCCTCCTCCCTATCCCCTTCTCCCCCCTCTCTCTCTCTCTCCACCCCGCGCGGCGGCCGCTTCCGATCCCTCTCCGACCGACCAAGCGCCGCCTCCAAGgtatttccctctcctgatcctcctccgtgcttggtggtggtggtggtggtggtgatggtgttcatcctctgtttgttgttaggggggaagaaaatccaat...
species | Oryza sativa |
transcript | LOC_Os10g28200.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GCGGCGGCCGCTTCCGATCCCTCTCCGACCGACCAAGCGCCGCCTCCAAG AATGGGGAGCTCGGAGAAGAACGGAACTGCTTATGGCGAGTACACCTATGCEST: gi|29639582|gb|CB644591.1|CB644591
genomic: GCGGCGGCCGCTTCCGATCCCTCTCCGACCGACCAAGCGCCGCCTCCAAGgtatttccct ... tctttgacagAATGGGGAGCTCGGAGAAGAACGGAACTGCTTATGGCGAGTACACCTATGC
EST: GCGGCGGCCGCTTCCGATCCCTCTCCGACCGACCAAGCGCCGCCTCCAAG AATGGGGAGCTCGGAGAAGAACGGAACTGCTTATGGCGAGTACACCTATGCEST: gi|29662156|gb|CB658431.1|CB658431
genomic: GCGGCGGCCGCTTCCGATCCCTCTCCGACCGACCAAGCGCCGCCTCCAAGgtatttccct ... tctttgacagAATGGGGAGCTCGGAGAAGAACGGAACTGCTTATGGCGAGTACACCTATGC
EST: GCGGCGGCCGCTTCCGATCCCTCTCCGACCGACCAAGCGCCGCCTCCAAG AATGGGGAGCTCGGAGAAGAACGGAACTGCTTATGGCGAGTACACCTATGCEST: gi|33684622|gb|CF312861.1|CF312861
genomic: GCGGCGGCCGCTTCCGATCCCTCTCCGACCGACCAAGCGCCGCCTCCAAGgtatttccct ... tctttgacagAATGGGGAGCTCGGAGAAGAACGGAACTGCTTATGGCGAGTACACCTATGC
EST: GCGGCGGCCGCTTCCGATCCCTCTCCGACCGACCAAGCGCCGCCTCCAAG AATGGGGAGCTCGGAGAAGAACGGAACTGCTTATGGCGAGTACACCTATGCEST: gi|29612786|gb|CB617799.1|CB617799
genomic: GCGGCGGCCGCTTCCGATCCCTCTCCGACCGACCAAGCGCCGCCTCCAAGgtatttccct ... tctttgacagAATGGGGAGCTCGGAGAAGAACGGAACTGCTTATGGCGAGTACACCTATGC
EST: GGCCGCTTCCGATCCCCCTACAAGCGACCAAGCGCCGCCTCCAAG AATGGGGAGCTCGGAGAAGAACGGAACTGCTTATGGCGAGTACACCCATGCEST: gi|33658335|gb|CF280948.1|CF280948
genomic: GGCCGCTTCCGATCCCTCTCCGACCGACCAAGCGCCGCCTCCAAGgtatttccct ... tctttgacagAATGGGGAGCTCGGAGAAGAACGGAACTGCTTATGGCGAGTACACCTATGC
EST: GCGGCGGCCGCTTCCGATCCCTCTCCGACCGACCAAGCGCCGCCTCCAAG AATGGGGAGCTCGGAGAAGAACGGAACTGCTTATGGCGAGTACACCTATGCEST: gi|33693065|gb|CF321304.1|CF321304
genomic: GCGGCGGCCGCTTCCGATCCCTCTCCGACCGACCAAGCGCCGCCTCCAAGgtatttccct ... tctttgacagAATGGGGAGCTCGGAGAAGAACGGAACTGCTTATGGCGAGTACACCTATGC
EST: GCGGCGGCCGCTTCCGATCCCTCTCCGACCGACCAAGCGCCGCCTCCAAG AATGGGGAGCTCGGAGAAGAACGGAACTGCTTATGGCGAGTACACCTATGCEST: gi|88367131|gb|CI563895.1|CI563895
genomic: GCGGCGGCCGCTTCCGATCCCTCTCCGACCGACCAAGCGCCGCCTCCAAGgtatttccct ... tctttgacagAATGGGGAGCTCGGAGAAGAACGGAACTGCTTATGGCGAGTACACCTATGC
EST: GCGGCGGCCGCTTCCGATCCCTCTCCGACCGACCAAGCGCCGCCTGCAAG AATGGGGAGCTCGGAGAAGAACGGAACTGCTTATGGCGAGTACACCTATGCEST: gi|29676976|gb|CB673251.1|CB673251
genomic: GCGGCGGCCGCTTCCGATCCCTCTCCGACCGACCAAGCGCCGCCTCCAAGgtatttccct ... tctttgacagAATGGGGAGCTCGGAGAAGAACGGAACTGCTTATGGCGAGTACACCTATGC
EST: GCGGCGGCCGCTTCCGATCCCTCTCCGACCGACCAAGCGCCGCCTCCAAG AATGGGGAGCTCGGAGAAGAACGGAACTGCTTATGGCGAGTACACCTATGCEST: gi|33796923|gb|CF324325.1|CF324325
genomic: GCGGCGGCCGCTTCCGATCCCTCTCCGACCGACCAAGCGCCGCCTCCAAGgtatttccct ... tctttgacagAATGGGGAGCTCGGAGAAGAACGGAACTGCTTATGGCGAGTACACCTATGC
EST: TCCGATCCCTCTCCGACCGACCAAGCGCCGCCTCCAAG AATGGGGAGCTCGGAGAAGAACGGAACTGCTTATGGCGAGTACACCTATGCEST: gi|29668588|gb|CB664863.1|CB664863
genomic: TCCGATCCCTCTCCGACCGACCAAGCGCCGCCTCCAAGgtatttccct ... tctttgacagAATGGGGAGCTCGGAGAAGAACGGAACTGCTTATGGCGAGTACACCTATGC
EST: GCGGCGGCCGCTTCCGATCCCTCTCCGACCGACCAAGCGCCGCCTCCAAG AATGGGGAGCTCGGAGAAGAACGGAACTGCTTATGGCGAGTACACCTATGCEST: gi|14981732|gb|BI306410.1|BI306410
genomic: GCGGCGGCCGCTTCCGATCCCTCTCCGACCGACCAAGCGCCGCCTCCAAGgtatttccct ... tctttgacagAATGGGGAGCTCGGAGAAGAACGGAACTGCTTATGGCGAGTACACCTATGC
EST: GCGGCCGCTTCCGATCCCTCTCCGACCGACCAAGCGCCGCCTCCAAG AATGGGGAGCTCGGAGAAGAATGGAACTGCTTATGGCGAGTACACCTATGCEST: gi|29656792|gb|CB653067.1|CB653067
genomic: GCGGCCGCTTCCGATCCCTCTCCGACCGACCAAGCGCCGCCTCCAAGgtatttccct ... tctttgacagAATGGGGAGCTCGGAGAAGAACGGAACTGCTTATGGCGAGTACACCTATGC
EST: GCGGCGGCCGCTTCCGATCCCTCTCCGACCGACCAAGCGCCGCCTCCAAG AATGGGGAGCTCGGAGAAGAACGGAACTGCTTATGGCGAGTACACCTATGCEST: gi|29663088|gb|CB659363.1|CB659363
genomic: GCGGCGGCCGCTTCCGATCCCTCTCCGACCGACCAAGCGCCGCCTCCAAGgtatttccct ... tctttgacagAATGGGGAGCTCGGAGAAGAACGGAACTGCTTATGGCGAGTACACCTATGC
EST: GCGGCGGCCGCTTCCGATCCCTCTCCGACCGACCAAGCGCCGCCTCCAAG AATGGGGAGCTCGGAGAAGAACGGAACTGCTTATGGCGAGTACACCTATGCEST: gi|13420589|gb|AU174679.1|AU174679
genomic: GCGGCGGCCGCTTCCGATCCCTCTCCGACCGACCAAGCGCCGCCTCCAAGgtatttccct ... tctttgacagAATGGGGAGCTCGGAGAAGAACGGAACTGCTTATGGCGAGTACACCTATGC
EST: GCGGCGGCCGCTTCCGATCCCTCTCCGACCGACCAAGCGCCGCCTCCAAG AATGGGGAGCTCGGAGAAGAACGGAACTGCTTATGGCGAGTACACCTATGCEST: gi|58677087|gb|CK065774.1|CK065774
genomic: GCGGCGGCCGCTTCCGATCCCTCTCCGACCGACCAAGCGCCGCCTCCAAGgtatttccct ... tctttgacagAATGGGGAGCTCGGAGAAGAACGGAACTGCTTATGGCGAGTACACCTATGC
EST: GCGGCGGCCGCTTCCGATCCCTCTCCGACCGACCAAGCGCCGCCTCCAAG AATGGGGAGCTCGGAGAAGAACGGAACTGCTTATGGCGAGTACACCTATGCEST: gi|29669312|gb|CB665587.1|CB665587
genomic: GCGGCGGCCGCTTCCGATCCCTCTCCGACCGACCAAGCGCCGCCTCCAAGgtatttccct ... tctttgacagAATGGGGAGCTCGGAGAAGAACGGAACTGCTTATGGCGAGTACACCTATGC
EST: GCGGCGGCCGCTTCCGATCCCTCTCCGACCGACCAAGCGCCGCCTCCAAG AATGGGGAGCTCGGAGAAGAACGGAACTGCTTATGGCGAGTACACCTATGCEST: gi|117230143|gb|CT846231.1|CT846231
genomic: GCGGCGGCCGCTTCCGATCCCTCTCCGACCGACCAAGCGCCGCCTCCAAGgtatttccct ... tctttgacagAATGGGGAGCTCGGAGAAGAACGGAACTGCTTATGGCGAGTACACCTATGC
EST: GCGGCGGCCGCTTCCGATCCCTCTCCGACCGACCAAGCGCCGCCTCCAAG AATGGGGAGCTCGGAGAAGAATGGAACTGCTTATGGCGAGTACACCTATGCEST: gi|29680859|gb|CB677134.1|CB677134
genomic: GCGGCGGCCGCTTCCGATCCCTCTCCGACCGACCAAGCGCCGCCTCCAAGgtatttccct ... tctttgacagAATGGGGAGCTCGGAGAAGAACGGAACTGCTTATGGCGAGTACACCTATGC
EST: GCGGCGGCCGCTTCCGATCCCTCTCCGACCGACCAAGCGCCGCCTCCAAG AATGGGGAGCTCGGAGAAGAACGGAACTGCTTATGGCGAGTACACCTATGCEST: gi|58672465|gb|CK061151.1|CK061151
genomic: GCGGCGGCCGCTTCCGATCCCTCTCCGACCGACCAAGCGCCGCCTCCAAGgtatttccct ... tctttgacagAATGGGGAGCTCGGAGAAGAACGGAACTGCTTATGGCGAGTACACCTATGC
EST: GCGGCGG-CGCTTCCGATCCCTCTCCGACCGACCAAGCGCCGCCTCCAAG AATGGGGAGCTCGGAGAAGAACGGAACTGCTTATGGCGAGTACACCTATGCEST: gi|33657604|gb|CF280218.1|CF280218
genomic: GCGGCGGCCGCTTCCGATCCCTCTCCGACCGACCAAGCGCCGCCTCCAAGgtatttccct ... tctttgacagAATGGGGAGCTCGGAGAAGAACGGAACTGCTTATGGCGAGTACACCTATGC
EST: GCGGCGGCCGCTTCCGATCCCTCTCCGACCGACCAAGCGCCGCCTCCAAG AATGGGGAGCTCGGAGAAGAACGGAACTGCTTATGGCGAGTACACCTATGCEST: gi|8858460|gb|AU095778.1|AU095778
genomic: GCGGCGGCCGCTTCCGATCCCTCTCCGACCGACCAAGCGCCGCCTCCAAGgtatttccct ... tctttgacagAATGGGGAGCTCGGAGAAGAACGGAACTGCTTATGGCGAGTACACCTATGC
EST: TTCCGATCCCTCTCCGACCGACCAAGCGCCGCCTCCAAG AANGGGGAGCTCGGAGAAGAACGGAACTGCTTATGGCGAGTACACCTATGCEST: gi|29688060|gb|CB684335.1|CB684335
genomic: TTCCGATCCCTCTCCGACCGACCAAGCGCCGCCTCCAAGgtatttccct ... tctttgacagAATGGGGAGCTCGGAGAAGAACGGAACTGCTTATGGCGAGTACACCTATGC
EST: GCGGCGGCCGCTTCCGATCCCTCTCCGACCGACCAAGCGCCGCCTCCAAG AATGGGGAGCTCGGAGAAGAACGGAACTGCTTATGGCGAGTACACCTATGCEST: gi|29672449|gb|CB668724.1|CB668724
genomic: GCGGCGGCCGCTTCCGATCCCTCTCCGACCGACCAAGCGCCGCCTCCAAGgtatttccct ... tctttgacagAATGGGGAGCTCGGAGAAGAACGGAACTGCTTATGGCGAGTACACCTATGC
EST: GCGGCGGCCGCTTCCGATCCCTCTCCGACCGACCAAGCGCCGCCTCCAAG AATGGGGAGCTCGGAGAAGAACGGAACTGCTTATGGCGAGTACACCTATGC
genomic: GCGGCGGCCGCTTCCGATCCCTCTCCGACCGACCAAGCGCCGCCTCCAAGgtatttccct ... tctttgacagAATGGGGAGCTCGGAGAAGAACGGAACTGCTTATGGCGAGTACACCTATGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTCCTCCTCCCTATCCCCTTCTCCCCCCTCTCTCTCTCTCTCCACCCCGCGCGGCGGCCGCTTCCGATCCCTCTCCGACCGACCAAGCGCCGCCTCCAAGgtatttccctctcctgatcctcctccgtgcttggtggtggtggtggtggtggtgatggtgttcatcctctgtttgttgttaggggggaagaaaatccaat
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