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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGGCGTGGTGATCCGGCCGGAGGAGCCTGGATGAAGGAGAGGAACCCGGCGGTTGCATCCTCCGCGCTGGCCCGGATCCTCGCCGCCTGCGCGTCCCAGgtgccgctcctctcgctcgcctctcggtctctgtgccgtgattagggcgattacatcctctctctctctctctctctctctctctctcttccccatcgaa...

Basic information

species Oryza sativa
transcript LOC_Os10g26140.2
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88351657|gb|CI617382.1|CI617382
EST:     CGGTTGCATCCTCCGCGCTGGCCCGGATCCTCGCCGCCTGCGCGTCCCAG                         GCAAAAGATTATGGGAGGTGCATAGCAGAAAAGGTCCCTGAGATTGAACAA
genomic: CGGTTGCATCCTCCGCGCTGGCCCGGATCCTCGCCGCCTGCGCGTCCCAGgtgccgctcc ... tgtaatgcagGCAAAAGATTATGGGAGGTGCATAGCAGAAAAGGTCCCTGAGATTGAACAA
EST: gi|88415002|gb|CI601834.1|CI601834
EST:     CGGTTGCATCCTCCGCGCTGGCCCGGATCCTCGCCGCCTGCGCGTCCCAG                         GCAAAAGATTATGGGAGGTGCATAGCAGAAAAGGTCCCTGA
genomic: CGGTTGCATCCTCCGCGCTGGCCCGGATCCTCGCCGCCTGCGCGTCCCAGgtgccgctcc ... tgtaatgcagGCAAAAGATTATGGGAGGTGCATAGCAGAAAAGGTCCCTGA
EST: gi|88426630|gb|CI579459.1|CI579459
EST:     CGGTTGCATCCTCCGCGCTGGCCCGGATCCTCGCCGCCTGCGCGTCCCAG                         GCAAAAGATTATGGGAGGTGCATAGCAGAAAAGGTCCCTGAGATTGAACAA
genomic: CGGTTGCATCCTCCGCGCTGGCCCGGATCCTCGCCGCCTGCGCGTCCCAGgtgccgctcc ... tgtaatgcagGCAAAAGATTATGGGAGGTGCATAGCAGAAAAGGTCCCTGAGATTGAACAA
EST: gi|86910761|gb|CI294773.1|CI294773
EST:     CGGTTGCATCCTCCGCGCTGGCCCGGATCCTCGCCGCCTGCGCGTCCCAG                         GCAAAAGATTATGGGAGGTGCATAGCAGAAAAGGTCCCTGAGATTGAACAA
genomic: CGGTTGCATCCTCCGCGCTGGCCCGGATCCTCGCCGCCTGCGCGTCCCAGgtgccgctcc ... tgtaatgcagGCAAAAGATTATGGGAGGTGCATAGCAGAAAAGGTCCCTGAGATTGAACAA
EST: gi|88449558|gb|CI579838.1|CI579838
EST:     CGGTTGCATCCTCCGCGCTGGCCCGGATCCTCGCCGCCTGCGCGTCCCAG                         GCAAAAGATTATGGGAGGTGCATAGCAGAAAAGGTCCCTGAGATTGAACAA
genomic: CGGTTGCATCCTCCGCGCTGGCCCGGATCCTCGCCGCCTGCGCGTCCCAGgtgccgctcc ... tgtaatgcagGCAAAAGATTATGGGAGGTGCATAGCAGAAAAGGTCCCTGAGATTGAACAA
EST: gi|88407793|gb|CI607927.1|CI607927
EST:     CGGTTGCATCCTCCGCGCTGGCCCGGATCCTCGCCGCCTGCGCGTCCCAG                         GCAAAAGATTATGGGAGGTGCATAGCAGAAAAGGTCCCTGAGATTGAACAA
genomic: CGGTTGCATCCTCCGCGCTGGCCCGGATCCTCGCCGCCTGCGCGTCCCAGgtgccgctcc ... tgtaatgcagGCAAAAGATTATGGGAGGTGCATAGCAGAAAAGGTCCCTGAGATTGAACAA
EST: gi|117245650|gb|CT848471.1|CT848471
EST:     CGGTTGCATCCTCCGCGCTGACCCGGATCCTCGCCGCCTGCGCGTCCCAG                         GCAAAAGATTATGGGAGGTGCATAGCAGAAAAGGTCCCTGAGATTGAACAA
genomic: CGGTTGCATCCTCCGCGCTGGCCCGGATCCTCGCCGCCTGCGCGTCCCAGgtgccgctcc ... tgtaatgcagGCAAAAGATTATGGGAGGTGCATAGCAGAAAAGGTCCCTGAGATTGAACAA
EST: gi|29634116|gb|CB639125.1|CB639125
EST:     CGGTTGCATCCTCCGCGCTGGCCCGGATCCTCGCCGCCTGCGCGTCCCAG                         GCAAAAGATTATGGGAGGTGCATAGCAGAAAAGGTCCCTGAGATTGAACAA
genomic: CGGTTGCATCCTCCGCGCTGGCCCGGATCCTCGCCGCCTGCGCGTCCCAGgtgccgctcc ... tgtaatgcagGCAAAAGATTATGGGAGGTGCATAGCAGAAAAGGTCCCTGAGATTGAACAA
EST: gi|88390435|gb|CI607471.1|CI607471
EST:     CGGTTGCATCCTCCGCGCTGGCCCGGATCCTCGCCGCCTGCGCGTCCCAG                         GCAAAAGATTATGGGAGGTGCATAGCAGAAAAGGTCCCTGAGATTGAACAA
genomic: CGGTTGCATCCTCCGCGCTGGCCCGGATCCTCGCCGCCTGCGCGTCCCAGgtgccgctcc ... tgtaatgcagGCAAAAGATTATGGGAGGTGCATAGCAGAAAAGGTCCCTGAGATTGAACAA
EST: gi|29630281|gb|CB635290.1|CB635290
EST:     CGGTTGCATCCTCCGCGCTGACCCGGATCCTCGCCGCCTGCGCGTCCCAG                         GCAAAAGATTATGGGAGGTGCATAGCAGAAAAGGTCCCTGAGATTGAACAA
genomic: CGGTTGCATCCTCCGCGCTGGCCCGGATCCTCGCCGCCTGCGCGTCCCAGgtgccgctcc ... tgtaatgcagGCAAAAGATTATGGGAGGTGCATAGCAGAAAAGGTCCCTGAGATTGAACAA