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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGAAGCCGCCGGCGACGAGCCCCGGCCAAAGCTGAAGCCACTGCACTGGGACAAGGTCCGGACGAGCTCCGACCGCGACATGGTCTGGGACCGGCTCAAgtcaaattcattccagttaagataaaaatttcagaaaaaaagatctggaattcttatgctgttcattacatttttcaatttgttgattgctgatatgaacatgttgcag

Basic information

species Oryza sativa
transcript LOC_Os10g20710.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os10g20710.1 (Oryza sativa), 5'ss of exon 1
lower sequence: GRMZM2G090693_T01 (Zea mays), 5'ss of exon 1
GTGAAGCCGCCGGCGACGAGCCCCGGCCAAAGCTGAAGCCACTGCACTGGGACAAGGTCCGGACGAGCTCCGACCGCGACATGGTCTGGGACCGGCTCAAgtcaaattcattccagttaagataaaaatttcagaaaaaaagatctggaattcttatgctgttcattacatttttcaatttgttgattgctgatatgaacatgttgcag
               ||||  |||| || ||||||||||| ||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||  |  | |||||| | |   | |  |||  |||     |    | |     | | |||  ||   |                    
---------------ACGAAGCCCGTCCCAAGCTGAAGCCGCTGCACTGGGACAAGGTCCGGGCGTGCTCCGACCGCGACATGGTCTGGGACCGGCTCAAGTCTAATTCGTTCCAgttaagatgcat-tctcagaacagacactattaaatcattaaaaattgtgatgctgacatgagttt-ctggcag--------------------