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ATCCAGAAAACTCTACTTCAGCAAATAGAGCTGGATTGAGGGGAACAAAGGACGTGCCAGATTACTTGAGGAGATACAATAGTTTGTTAATTGATGGAAGgtataatgttggacataataattgctattaatctgttcccagaacaccccttacatacatggaattttcatattaaatatgctgcactctttgtgctataaatattttttgcttgatacttcaatttggtatggtcag
species | Oryza sativa |
transcript | LOC_Os10g10170.4 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GACGTGCCAGATTACTTGAGGAGATACAATAGTTTGTTAATTGATGGAAG ATTGAAAGACTCTGTGGATCTATTGGAAAGCATGGAGCAAAAGGGATTGCTEST: gi|29614515|gb|CB619528.1|CB619528
genomic: GACGTGCCAGATTACTTGAGGAGATACAATAGTTTGTTAATTGATGGAAGgtataatgtt ... gtatggtcagATTGAAAGACTCTGTGGATCTATTGGAAAGCATGGAGCAAAAGGGATTGCT
EST: GACGTGCCAGATTACTTGAGGAGATACAATAGTTTGTTAATTGATGGAAG ATTGAAAGACTCTGTGGATCTATTGGAAAGCATGGAGCAAAAGGGATTGCTEST: gi|38481669|gb|CF965758.1|CF965758
genomic: GACGTGCCAGATTACTTGAGGAGATACAATAGTTTGTTAATTGATGGAAGgtataatgtt ... gtatggtcagATTGAAAGACTCTGTGGATCTATTGGAAAGCATGGAGCAAAAGGGATTGCT
EST: GACGTGCCAGATTACTTGAGGAGATACAATAGTTTGTTAATTGATGGAAG ATTGAAAGACTCTGTGGATCTATTGGAAAGCATGGAGCAAAAGGGATTGCTEST: gi|88723670|gb|CI747180.1|CI747180
genomic: GACGTGCCAGATTACTTGAGGAGATACAATAGTTTGTTAATTGATGGAAGgtataatgtt ... gtatggtcagATTGAAAGACTCTGTGGATCTATTGGAAAGCATGGAGCAAAAGGGATTGCT
EST: GACGTGCCAGATTACTTGAGGAGATACAATAGTTTGTTAATTGATGGAAG ATTGAAAGACTCTGTGGATCTATTGGAAAGCATGGAGCAAAAGGGATTGCTEST: gi|88716823|gb|CI740333.1|CI740333
genomic: GACGTGCCAGATTACTTGAGGAGATACAATAGTTTGTTAATTGATGGAAGgtataatgtt ... gtatggtcagATTGAAAGACTCTGTGGATCTATTGGAAAGCATGGAGCAAAAGGGATTGCT
EST: GACGTGCCAGATTACTTGAGGAGATACAATAGTTTGTTAATTGATGGAAG ATTGAAAGACTCTGTGGATCTATTGGAAAGCATGGAGCAAAAGGGATTGCT
genomic: GACGTGCCAGATTACTTGAGGAGATACAATAGTTTGTTAATTGATGGAAGgtataatgtt ... gtatggtcagATTGAAAGACTCTGTGGATCTATTGGAAAGCATGGAGCAAAAGGGATTGCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATCCAGAAAACTCTACTTCAGCAAATAGAGCTGGATTGAGGGGAACAAAGGACGTGCCAGATTACTTGAGGAGATACAATAGTTTGTTAATTGATGGAAGgtataatgttggacataataattgctattaatctgttcccagaacaccccttacatacatggaattttcatattaaatatgctgcactctttgtgctataaatattttttgcttgatacttcaatttggtatggtcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG