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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGAAATCCACACCGCTACTACGGCTAATTACGCTCTCTTTCTTCTTCTCTCGCATCATGCCGCGATTTTCGAATTTCCCTAGATTTTTTCCGTCTCAAAGgtaccgatttattttatttttttttcaattttttgatcctgatgatgcgttagatctgtagcacgcgcgttcaattcgtctcttgttttgaggatttgtgttgctttttgtgggttggtggtttaggatttacgttttcttttatcttgttgggggtttctag

Basic information

species Oryza sativa
transcript LOC_Os10g06130.5
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88336836|gb|CI626916.1|CI626916
EST:     CGCATCATGCCGCGATTTTCGAATTTCCCTAGATTTTTTCCGTCTCAAAG                         GGTTAGGGTTTTGGGATGGCGGATCGGCAGCAGTCGGAGGAGCCGGAGGAG
genomic: CGCATCATGCCGCGATTTTCGAATTTCCCTAGATTTTTTCCGTCTCAAAGgtaccgattt ... gggtttctagGGTTAGGGTTTTGGGATGGCGGATCGGCAGCAGTCGGAGGAGCCGGAGGAG
EST: gi|88311243|gb|CI570317.1|CI570317
EST:     CGCATCATGCCGCGATTTTCGAATTTCCCTAGATTTTTTCCGTCTCAAAG                         GGTTAGGGTTTTGGGATGGCGGATCGGCAGCAGTCGGAGGAGCCGGAGGAG
genomic: CGCATCATGCCGCGATTTTCGAATTTCCCTAGATTTTTTCCGTCTCAAAGgtaccgattt ... gggtttctagGGTTAGGGTTTTGGGATGGCGGATCGGCAGCAGTCGGAGGAGCCGGAGGAG
EST: gi|88728237|gb|CI751747.1|CI751747
EST:     CGCATCATGCCGCGATTTTCGAATTTCCCTAGATTTTTTCCGTCTCAAAG                         GGTTAGGGTTTTGGGATGGCGGATCGGCAGCAGTCGGAGGAGCCGGAGGAG
genomic: CGCATCATGCCGCGATTTTCGAATTTCCCTAGATTTTTTCCGTCTCAAAGgtaccgattt ... gggtttctagGGTTAGGGTTTTGGGATGGCGGATCGGCAGCAGTCGGAGGAGCCGGAGGAG
EST: gi|88692034|gb|CI735609.1|CI735609
EST:     CGCATCATGCCGCGATTTTCGAATTTCCCTAGATTTTTTCCGTCTCAAAG                         GGTTAGGGTTTTGGGATGGCGGATCGGCAGCAGTCGGAGGAGCCGGAGGAG
genomic: CGCATCATGCCGCGATTTTCGAATTTCCCTAGATTTTTTCCGTCTCAAAGgtaccgattt ... gggtttctagGGTTAGGGTTTTGGGATGGCGGATCGGCAGCAGTCGGAGGAGCCGGAGGAG