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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCACGAGCACCCGGTGGCCGCCGGCGCGCCGCTGCGCCTCCTCGTCGTCGGCGACTGGGGCCGGAAGGGCGGCTACAACCAGACAAGAGTTGCAGAACAGgtgattttgctttctttgcatcaaacattcattcaacaattcaatcagagaatgttaatttgttggcaccgatcaaaagaagaaaagagaacaactgtatatcgatcagagaattttgtttgtttgtttgtgaggagttag

Basic information

species Oryza sativa
transcript LOC_Os10g02750.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88324785|gb|CI657656.1|CI657656
EST:     GCGACTGGGGCCGGAAGGGCGGCTACAACCAGACAAGAGTTGCAGAACAG                         ATGGGGAAGGTTGCGGAGGAGACGGAGATCGACTTCGTCGTGTCAACCGGC
genomic: GCGACTGGGGCCGGAAGGGCGGCTACAACCAGACAAGAGTTGCAGAACAGgtgattttgc ... gaggagttagATGGGGAAGGTTGCGGAGGAGACGGAGATCGACTTCGTCGTGTCAACCGGC
EST: gi|88572225|gb|CI663796.1|CI663796
EST:     GCGACTGGGGCCGGAAGGGCGGCTACAACCAGACAAGAGTTGCAGAACAG                         ATGGGGAAGGTTGCGGAGGAGACGGAGATCGACTTCGTCGTGTCAACCGGC
genomic: GCGACTGGGGCCGGAAGGGCGGCTACAACCAGACAAGAGTTGCAGAACAGgtgattttgc ... gaggagttagATGGGGAAGGTTGCGGAGGAGACGGAGATCGACTTCGTCGTGTCAACCGGC
EST: gi|88357935|gb|CI650671.1|CI650671
EST:     GCGACTGGGGCCGGAAGGGCGGCTACAACCAGACAAGAGTTGCAGAACAG                         ATGGGGAAGGTTGCGGAGGAGACGGAGATCGACTTCGTCGTGTCAACCGGC
genomic: GCGACTGGGGCCGGAAGGGCGGCTACAACCAGACAAGAGTTGCAGAACAGgtgattttgc ... gaggagttagATGGGGAAGGTTGCGGAGGAGACGGAGATCGACTTCGTCGTGTCAACCGGC
EST: gi|88309510|gb|CI655878.1|CI655878
EST:     GCGACTGGGGCCGGAAGGGCGGCTACAACCAGACAAGAGTTGCAGAACAG                         ATGGGGAAGGTTGCGGAGGAGACGGAGATCGACTTCGTCGTGTCAACCGGC
genomic: GCGACTGGGGCCGGAAGGGCGGCTACAACCAGACAAGAGTTGCAGAACAGgtgattttgc ... gaggagttagATGGGGAAGGTTGCGGAGGAGACGGAGATCGACTTCGTCGTGTCAACCGGC
EST: gi|88327657|gb|CI646240.1|CI646240
EST:     GCGACTGGGGCCGGAAGGGCGGCTACAACCAGACAAGAGTTGCAGAACAG                         ATGGGGAAGGTTGCGGAGGAGACGGAGATCGACTTCGTCGTGTCAACCGGC
genomic: GCGACTGGGGCCGGAAGGGCGGCTACAACCAGACAAGAGTTGCAGAACAGgtgattttgc ... gaggagttagATGGGGAAGGTTGCGGAGGAGACGGAGATCGACTTCGTCGTGTCAACCGGC
EST: gi|88308908|gb|CI654191.1|CI654191
EST:     GCGACTGGGGCCGGAAGGGCGGCTACAACCAGACAAGAGTTGCAGAACAG                         ATGGGGAAGGTTGCGGAGGAGACGGAGATCGACTTCGTCGTGTCAACCGGC
genomic: GCGACTGGGGCCGGAAGGGCGGCTACAACCAGACAAGAGTTGCAGAACAGgtgattttgc ... gaggagttagATGGGGAAGGTTGCGGAGGAGACGGAGATCGACTTCGTCGTGTCAACCGGC