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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCCTCGTCGCGTCGCGGGACGAGCTCTACATCACGTCCAAGCTATGGGTTGCCCACGCGCACCCCGGCCATGTCCTGCCATCTCTTAGGCGTGCGCTCCGgtgagtataactgcaacttattttgttggactagctatatatgctcatgcgttgcaccgggatcattaattattcgtgtcattcttcatgtccagctgcg...

Basic information

species Oryza sativa
transcript LOC_Os10g02480.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88359931|gb|CI679700.1|CI679700
EST:     GCCCACGCGCACCCCGGCCATGTCCTGCCATCTCTTAGGCGTGCGCTCCG                         GAAGATGCAGATGGAGTATCTCGATCTGTACCTGATTCACTTTCCGGTGAG
genomic: GCCCACGCGCACCCCGGCCATGTCCTGCCATCTCTTAGGCGTGCGCTCCGgtgagtataa ... aatattgtagGAAGATGCAGATGGAGTATCTCGATCTGTACCTGATTCACTTTCCGGTGAG
EST: gi|88588653|gb|CI706489.1|CI706489
EST:     GCCCACGCGCACCCCGGCCATGTCCTGCCATCTCTTAGGCGTGCGCTCCG                         GAAGATGCAGATGGAGTATCTCGATCTGTACC
genomic: GCCCACGCGCACCCCGGCCATGTCCTGCCATCTCTTAGGCGTGCGCTCCGgtgagtataa ... aatattgtagGAAGATGCAGATGGAGTATCTCGATCTGTACC
EST: gi|88347993|gb|CI636086.1|CI636086
EST:     CCCACGCGCACCCCGGCCCATGTCCTGCCATCTCTTAGGCGTGCGCTCCG                         GAAGATGCAGATGGAGTA
genomic: CCCACGCGCACCCCGGCC-ATGTCCTGCCATCTCTTAGGCGTGCGCTCCGgtgagtataa ... aatattgtagGAAGATGCAGATGGAGTA
EST: gi|33800272|gb|CF326002.1|CF326002
EST:     GCCCACGCGCACCCCGGCCATGTCCTGCCATCTCTTAGGCGTGCGCTCCG                         GAAGATGCAGATGGAGTATCTCGATCTGTACCTGATTCACTTTCCGGTGAG
genomic: GCCCACGCGCACCCCGGCCATGTCCTGCCATCTCTTAGGCGTGCGCTCCGgtgagtataa ... aatattgtagGAAGATGCAGATGGAGTATCTCGATCTGTACCTGATTCACTTTCCGGTGAG
EST: gi|29638999|gb|CB644008.1|CB644008
EST:     GCCCACGCGCACCCCGGCCATGTCCTGCCATCTCTTAGGCGTGCGCTCCG                         GAAGATGCAGATGGAGTATCTCGATCTGTACCTGATTCACTTTCCGGTGAG
genomic: GCCCACGCGCACCCCGGCCATGTCCTGCCATCTCTTAGGCGTGCGCTCCGgtgagtataa ... aatattgtagGAAGATGCAGATGGAGTATCTCGATCTGTACCTGATTCACTTTCCGGTGAG
EST: gi|88592482|gb|CI710586.1|CI710586
EST:     GCCCACGCGCACCCCGGCCATGTCCTGCCATCTCTTAGGCGTGCGCTCCG                         GAAGATGCAGATGGAGTATCTCGATCTGTA
genomic: GCCCACGCGCACCCCGGCCATGTCCTGCCATCTCTTAGGCGTGCGCTCCGgtgagtataa ... aatattgtagGAAGATGCAGATGGAGTATCTCGATCTGTA
EST: gi|88359418|gb|CI679955.1|CI679955
EST:     GCCCACGCGCACCCCGGCCATGTCCTGCCATCTCTTAGGCGTGCGCTCCG                         GAAGATGCAGATGGAGTATCTCGATCTGTACCTGATTCACTTTCC
genomic: GCCCACGCGCACCCCGGCCATGTCCTGCCATCTCTTAGGCGTGCGCTCCGgtgagtataa ... aatattgtagGAAGATGCAGATGGAGTATCTCGATCTGTACCTGATTCACTTTCC
EST: gi|88306988|gb|CI639416.1|CI639416
EST:     GCCCACGCGCACCCCGGCCATGTCCTGCCATCTCTTAGGCGTGCGCTCCG                         GAAGATGCAGATGGAGTATCTCGATCTGTACCTGATTCACTTTCCGGTGAG
genomic: GCCCACGCGCACCCCGGCCATGTCCTGCCATCTCTTAGGCGTGCGCTCCGgtgagtataa ... aatattgtagGAAGATGCAGATGGAGTATCTCGATCTGTACCTGATTCACTTTCCGGTGAG
EST: gi|88300163|gb|CI582397.1|CI582397
EST:     GCCCACGCGCACCCCGGCCATGTCCTGCCATCTCTTAGGCGTGCGCTCCG                         GAAGATGCAGATGGAGTATCTCGATCTGTACCTGATTCACTTTCCGGTGAG
genomic: GCCCACGCGCACCCCGGCCATGTCCTGCCATCTCTTAGGCGTGCGCTCCGgtgagtataa ... aatattgtagGAAGATGCAGATGGAGTATCTCGATCTGTACCTGATTCACTTTCCGGTGAG
EST: gi|29688766|gb|CB685041.1|CB685041
EST:     GCCCACGCGCACCCCGGCCATGTCCTGCCATCTCTTAGGCGTGCGCTCCG                         GAAGATGCAGATGGAGTATCTCGATCTGTACCTGATTCACTTTCCGGTGAG
genomic: GCCCACGCGCACCCCGGCCATGTCCTGCCATCTCTTAGGCGTGCGCTCCGgtgagtataa ... aatattgtagGAAGATGCAGATGGAGTATCTCGATCTGTACCTGATTCACTTTCCGGTGAG
EST: gi|88577362|gb|CI673938.1|CI673938
EST:     GCCCACGCGCACCCCGGCCATGTCCTGCCATCTCTTAGGCGTGCGCTCCG                         GAAGATGCAGATGGAGTATCTCGATCTGTACCTGATTCACTTTCCGGTGAG
genomic: GCCCACGCGCACCCCGGCCATGTCCTGCCATCTCTTAGGCGTGCGCTCCGgtgagtataa ... aatattgtagGAAGATGCAGATGGAGTATCTCGATCTGTACCTGATTCACTTTCCGGTGAG
EST: gi|88576974|gb|CI673520.1|CI673520
EST:     GCCCACGCGCACCCCGGCCATGTCCTGCCATCTCTTAGGCGTGCGCTCCG                         GAAGATGCAGATGGAGTATCTCG
genomic: GCCCACGCGCACCCCGGCCATGTCCTGCCATCTCTTAGGCGTGCGCTCCGgtgagtataa ... aatattgtagGAAGATGCAGATGGAGTATCTCG
EST: gi|86829754|gb|CI286881.1|CI286881
EST:     GCCCACGCGCACCCCGGCCATGTCCTGCCATCTCTTAGGCGTGCGCTCCG                         GAAGATGCAGATGGAGTATCTCGATCTGTACCTGATTCACTTTCCGG
genomic: GCCCACGCGCACCCCGGCCATGTCCTGCCATCTCTTAGGCGTGCGCTCCGgtgagtataa ... aatattgtagGAAGATGCAGATGGAGTATCTCGATCTGTACCTGATTCACTTTCCGG
EST: gi|25798126|gb|CA754094.1|CA754094
EST:     GCCCACGCGCACCCCGGCCATGTCCTGCCATCTCTTAGGCGTGCGCTCCG                         GAAGATGCAGATGGAGTATCTCGATCTGTACCTGATTCACTTTCCGGTGAG
genomic: GCCCACGCGCACCCCGGCCATGTCCTGCCATCTCTTAGGCGTGCGCTCCGgtgagtataa ... aatattgtagGAAGATGCAGATGGAGTATCTCGATCTGTACCTGATTCACTTTCCGGTGAG
EST: gi|88582037|gb|CI699264.1|CI699264
EST:     GCCCACGCGCACCCCGGCCATGTCCTGCCATCTCTTAGGCGTGCGCTCCG                         GAAGATGCAGATGGAGTATCTCGATCTGTACCTGATTCACTTTCCGGTGAG
genomic: GCCCACGCGCACCCCGGCCATGTCCTGCCATCTCTTAGGCGTGCGCTCCGgtgagtataa ... aatattgtagGAAGATGCAGATGGAGTATCTCGATCTGTACCTGATTCACTTTCCGGTGAG
EST: gi|88581115|gb|CI698088.1|CI698088
EST:     GCCCACGCGCACCCCGGCCATGTCCTGCCATCTCTTAGGCGTGCGCTCCG                         GAAGATGCAGATGGAG
genomic: GCCCACGCGCACCCCGGCCATGTCCTGCCATCTCTTAGGCGTGCGCTCCGgtgagtataa ... aatattgtagGAAGATGCAGATGGAG
EST: gi|38471635|gb|CF955766.1|CF955766
EST:     GCCCACGCGCACCCCGGCCATGTCCTGCCATCTCTTAGGCGTGCGCTCCG                         GAAGATGCAGATGGAGTATCTCGATCTGTACCTGATTCACTTTCCGGTGAG
genomic: GCCCACGCGCACCCCGGCCATGTCCTGCCATCTCTTAGGCGTGCGCTCCGgtgagtataa ... aatattgtagGAAGATGCAGATGGAGTATCTCGATCTGTACCTGATTCACTTTCCGGTGAG
EST: gi|58696277|gb|CK084964.1|CK084964
EST:     GCCCACGCGCACCCCGGCCATGTCCTGCCATCTCTTAGGCGTGCGCTCCG                         GAAGATGCAGATGGAGTATCTCGATCTGTACCTGATTCACTTTCCGGTGAG
genomic: GCCCACGCGCACCCCGGCCATGTCCTGCCATCTCTTAGGCGTGCGCTCCGgtgagtataa ... aatattgtagGAAGATGCAGATGGAGTATCTCGATCTGTACCTGATTCACTTTCCGGTGAG
EST: gi|88581572|gb|CI698571.1|CI698571
EST:     GCCCACGCGCACCCCGGCCATGTCCTGCCATCTCTTAGGCGTGCGCTCCG                         GAAGATGCAGATGGAGTATCTCGATCTGTACCTGATTCACTTTC
genomic: GCCCACGCGCACCCCGGCCATGTCCTGCCATCTCTTAGGCGTGCGCTCCGgtgagtataa ... aatattgtagGAAGATGCAGATGGAGTATCTCGATCTGTACCTGATTCACTTTC
EST: gi|88451682|gb|CI694444.1|CI694444
EST:     GCCCACGCCCACCCCGGCCATGTCCTGCCATCTCTTAGGCGTGCGCTCCG                         GAAGATGCACATGGAGTATCTCGATCTGTACCTGATTCACTTTCCGGTGAG
genomic: GCCCACGCGCACCCCGGCCATGTCCTGCCATCTCTTAGGCGTGCGCTCCGgtgagtataa ... aatattgtagGAAGATGCAGATGGAGTATCTCGATCTGTACCTGATTCACTTTCCGGTGAG
EST: gi|88290709|gb|CI667082.1|CI667082
EST:     GCCCACGCGCACCCCGGCCATGTCCTGCCATCTCTTAGGCGTGCGCTCCG                         GAAGATGCAGATGGAGTATCTCGAT
genomic: GCCCACGCGCACCCCGGCCATGTCCTGCCATCTCTTAGGCGTGCGCTCCGgtgagtataa ... aatattgtagGAAGATGCAGATGGAGTATCTCGAT