1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
TGTGGTGGTCGACGACGATGGCGCCACCTTCCGCTACACGCGCTCCCTCCTCCACAGCACTCTGCAGCTGATGGGATGCAAGCCGCGCCATGCCTTCGAGgtgagataggtttcccctcccctctcttcccatcaatccattccatttatcttgtcgattgagatccccccccgccgcag
species | Oryza sativa |
transcript | LOC_Os09g39870.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TCCACAGCACTCTGCAGCTGATGGGATGCAAGCCGCGCCATGCCTTCGAG ATCAGCGGCAGGGTGTTCGACGAGATCCGAGGTCACATGGGCGGTGACATGEST: gi|88736051|gb|CI759559.1|CI759559
genomic: TCCACAGCACTCTGCAGCTGATGGGATGCAAGCCGCGCCATGCCTTCGAGgtgagatagg ... cccgccgcagATCAGCGGCAGGGTGTTCGACGAGATCCGAGGTCACATGGGCGGTGACATG
EST: TCCACAGCACTCTGCAGCTGATGGGATGCAAGCCGCGCCATGCCTTCGAG ATCAGCGGCAGGGTGTTCGACGAGATCCGAGGTCACATGGGCGGTGACATGEST: gi|88742741|gb|CI766249.1|CI766249
genomic: TCCACAGCACTCTGCAGCTGATGGGATGCAAGCCGCGCCATGCCTTCGAGgtgagatagg ... cccgccgcagATCAGCGGCAGGGTGTTCGACGAGATCCGAGGTCACATGGGCGGTGACATG
EST: TCCACAGCACTCTGCAGCTGATGGGATGCAAGCCGCGCCATGCCTTCGAG ATCAGCGGCAGGGTGTTCGACGAGATCCGAGGTCACATGGGCGGTGACATGEST: gi|58612669|gb|CK040381.1|CK040381
genomic: TCCACAGCACTCTGCAGCTGATGGGATGCAAGCCGCGCCATGCCTTCGAGgtgagatagg ... cccgccgcagATCAGCGGCAGGGTGTTCGACGAGATCCGAGGTCACATGGGCGGTGACATG
EST: TCCACAGCACTCTGCAGCTGATGGGATGCAAGCCGCGCCATGCCTTCGAG ATCAGCGGCAGGGTGTTCGACGAGATCCGAGGTCACATGGGCGGTGACATGEST: gi|88343220|gb|CI627180.1|CI627180
genomic: TCCACAGCACTCTGCAGCTGATGGGATGCAAGCCGCGCCATGCCTTCGAGgtgagatagg ... cccgccgcagATCAGCGGCAGGGTGTTCGACGAGATCCGAGGTCACATGGGCGGTGACATG
EST: TCCACAGCACTCTGCAGCTGATGGGATGCAAGCCGCGCCATGCCTTCGAG ATCAGCGGCAGGGTGTTCGACGAGATCCGAGGTCACATGGGCGGTGACATGEST: gi|88394964|gb|CI607691.1|CI607691
genomic: TCCACAGCACTCTGCAGCTGATGGGATGCAAGCCGCGCCATGCCTTCGAGgtgagatagg ... cccgccgcagATCAGCGGCAGGGTGTTCGACGAGATCCGAGGTCACATGGGCGGTGACATG
EST: TCCACAGCACTCTGCAGCTGATGGGATGCAAGCCGCGCCATGCCTTCGAG ATCAGCGGCAGGGTGTTCGACGAGATCCGAGGTCACATGGGCGGTGACATGEST: gi|58668260|gb|CK056946.1|CK056946
genomic: TCCACAGCACTCTGCAGCTGATGGGATGCAAGCCGCGCCATGCCTTCGAGgtgagatagg ... cccgccgcagATCAGCGGCAGGGTGTTCGACGAGATCCGAGGTCACATGGGCGGTGACATG
EST: TCCACAGCACTCTGCAGCTGATGGGATGCAAGCCGCGCCATGCCTTCGAG ATCAGCGGCAGGGTGTTCGACGAGATCCGAGGTCACATGGGCGGTGACATGEST: gi|58658382|gb|CK047062.1|CK047062
genomic: TCCACAGCACTCTGCAGCTGATGGGATGCAAGCCGCGCCATGCCTTCGAGgtgagatagg ... cccgccgcagATCAGCGGCAGGGTGTTCGACGAGATCCGAGGTCACATGGGCGGTGACATG
EST: TCCACAGCACTCTGCAGCTGATGGGATGCAAGCCGCGCCATGCCTTCGAG ATCAGCGGCAGGGTGTTCGACGAGATCCGAGGTCACATGGGCGGTGACATGEST: gi|88356196|gb|CI627644.1|CI627644
genomic: TCCACAGCACTCTGCAGCTGATGGGATGCAAGCCGCGCCATGCCTTCGAGgtgagatagg ... cccgccgcagATCAGCGGCAGGGTGTTCGACGAGATCCGAGGTCACATGGGCGGTGACATG
EST: TCCACAGCACTCTGCAGCTGATGGGATGCAAGCCGCGCCATGCCTTCGAG ATCAGCGGCAGGGTGTTCGACGAGATCCGAGGTCACATGGGCGGTGACATGEST: gi|88737179|gb|CI760687.1|CI760687
genomic: TCCACAGCACTCTGCAGCTGATGGGATGCAAGCCGCGCCATGCCTTCGAGgtgagatagg ... cccgccgcagATCAGCGGCAGGGTGTTCGACGAGATCCGAGGTCACATGGGCGGTGACATG
EST: TCCACAGCACTCTGCAGCTGATGGGATGCAAGCCGCGCCATGCCTTCGAG ATCAGCGGCAGGGTGTTCGACGAGATCCGAGGTCACATGGGCGGTGACATGEST: gi|88738457|gb|CI761965.1|CI761965
genomic: TCCACAGCACTCTGCAGCTGATGGGATGCAAGCCGCGCCATGCCTTCGAGgtgagatagg ... cccgccgcagATCAGCGGCAGGGTGTTCGACGAGATCCGAGGTCACATGGGCGGTGACATG
EST: TCCACAGCACTCTGCAGCTGATGGGATGCAAGCCGCGCCATGCCTTCGAG ATCAGCGGCAGGGTGTTCGACGAGATCCGAGGTCACATGGGCGGTGACATGEST: gi|88364608|gb|CI612423.1|CI612423
genomic: TCCACAGCACTCTGCAGCTGATGGGATGCAAGCCGCGCCATGCCTTCGAGgtgagatagg ... cccgccgcagATCAGCGGCAGGGTGTTCGACGAGATCCGAGGTCACATGGGCGGTGACATG
EST: TCCACAGCACTCTGCAGCTGATGGGATGCAAGCCGCGCCATGCCTTCGAG ATCAGCGGCAGGGTGTTCGACGAGATCCGAGGTCACATGGGCGGTGACATGEST: gi|88403298|gb|CI573021.1|CI573021
genomic: TCCACAGCACTCTGCAGCTGATGGGATGCAAGCCGCGCCATGCCTTCGAGgtgagatagg ... cccgccgcagATCAGCGGCAGGGTGTTCGACGAGATCCGAGGTCACATGGGCGGTGACATG
EST: TCCACAGCACTCTGCAGCTGATGGGATGCAAGCCGCGCCATGCCTTCGAG ATCAGCGGCAGGGTGTTCGACGAGATCCGAGGTCACATGGGCGGTGACATGEST: gi|58654746|gb|CK043426.1|CK043426
genomic: TCCACAGCACTCTGCAGCTGATGGGATGCAAGCCGCGCCATGCCTTCGAGgtgagatagg ... cccgccgcagATCAGCGGCAGGGTGTTCGACGAGATCCGAGGTCACATGGGCGGTGACATG
EST: CAGCACTCTGCAGCTGATGGGATGCAAGCCGCGCCATGCCTTCGAG ATCAGCGGCGGGGTGTTCGACGAGATCCGAGGTCACATGGGCGGTGACATGEST: gi|88415928|gb|CI594040.1|CI594040
genomic: CAGCACTCTGCAGCTGATGGGATGCAAGCCGCGCCATGCCTTCGAGgtgagatagg ... cccgccgcagATCAGCGGCAGGGTGTTCGACGAGATCCGAGGTCACATGGGCGGTGACATG
EST: TCCACAGCACTCTGCAGCTGATGGGATGCAAGCCGCGCCATGCCTTCGAG ATCAGCGGCAGGGTGTTCGACGAGATCCGAGGTCACATGGGCGGTGACATG
genomic: TCCACAGCACTCTGCAGCTGATGGGATGCAAGCCGCGCCATGCCTTCGAGgtgagatagg ... cccgccgcagATCAGCGGCAGGGTGTTCGACGAGATCCGAGGTCACATGGGCGGTGACATG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGTGGTGGTCGACGACGATGGCGCCACCTTCCGCTACACGCGCTCCCTCCTCCACAGCACTCTGCAGCTGATGGGATGCAAGCCGCGCCATGCCTTCGAGgtgagataggtttcccctcccctctcttcccatcaatccattccatttatcttgtcgattgagatccccccccgccgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT