1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GACGACCCGCAGCACCCGTCGTCCGGTCGCCCCGATTCGGTTGACCAGCTCGATCAGTTCCTCCGGGAGGCGCTCGAGAAGCCGAGGGAGCGGCTCTCTGgtataatattcgaatccccatcccccctgctgcaccctcctctgcttcgtatcataggcctagctaccctgtttctacaagcagtaacaagtcgcacttg...
species | Oryza sativa |
transcript | LOC_Os09g39462.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CGATCAGTTCCTCCGGGAGGCGCTCGAGAAGCCGAGGGAGCGGCTCTCTG TGCTAAGGATGGAGCAAGACATTTTGAAGTTCATTCATGACCCTACGCCAGEST: gi|88299149|gb|CI570119.1|CI570119
genomic: CGATCAGTTCCTCCGGGAGGCGCTCGAGAAGCCGAGGGAGCGGCTCTCTGgtataatatt ... ctcattgtagTGCTAAGGATGGAGCAAGACATTTTGAAGTTCATTCATGACCCTACGC-AG
EST: CGATCAGTTCCTCCGGGAGGCGCTCGAGAAGCCGAGGGAGCGGCTCTCTG TGCTAAGGATGGAGCAAGACATTTTGAACGTTCATTCATGACCCTACGCAGEST: gi|88311449|gb|CI572505.1|CI572505
genomic: CGATCAGTTCCTCCGGGAGGCGCTCGAGAAGCCGAGGGAGCGGCTCTCTGgtataatatt ... ctcattgtagTGCTAAGGATGGAGCAAGACATTTTGAA-GTTCATTCATGACCCTACGCAG
EST: CGATCAGTTCCTCCGGGAGGCGCTCGAGAAGCCGAGGGAGCGGCTCTCTG TGCTAAGGATGGAGCAAGACEST: gi|29633027|gb|CB638036.1|CB638036
genomic: CGATCAGTTCCTCCGGGAGGCGCTCGAGAAGCCGAGGGAGCGGCTCTCTGgtataatatt ... ctcattgtagTGCTAAGGATGGAGCAAGAC
EST: CGATCAGTTCCTCCGGGAGGCGCTCGAGAAGCCGAGGGAGCGGCTCTCTG TGCTAAGGATGGAGCAAGACATTTTGAAGTTCATTCATGACCCTACGCAGAEST: gi|3762486|gb|C99734.1|C99734
genomic: CGATCAGTTCCTCCGGGAGGCGCTCGAGAAGCCGAGGGAGCGGCTCTCTGgtataatatt ... ctcattgtagTGCTAAGGATGGAGCAAGACATTTTGAAGTTCATTCATGACCCTACGCAGA
EST: CGATCAGTTCCTCCGGGAGGCGCTCGAGAAGCCGAGGGAGCGGCTCTCTG TGCTAAGGATGGAGCAAGACATTTTGAAGTTCATTCATGACCCTTACGCAGEST: gi|88449673|gb|CI565651.1|CI565651
genomic: CGATCAGTTCCTCCGGGAGGCGCTCGAGAAGCCGAGGGAGCGGCTCTCTGgtataatatt ... ctcattgtagTGCTAAGGATGGAGCAAGACATTTTGAAGTTCATTCATGACCCT-ACGCAG
EST: CGATCAGTTCCTCCGGGAGGCGCTCGAGAAGCCGAGGGAGCGGCTCTCTG TGCTAAGGATGGAGCAAGACATTTTGAAGTTCATTCATGACCCTACGCAGAEST: gi|117236321|gb|CT842251.1|CT842251
genomic: CGATCAGTTCCTCCGGGAGGCGCTCGAGAAGCCGAGGGAGCGGCTCTCTGgtataatatt ... ctcattgtagTGCTAAGGATGGAGCAAGACATTTTGAAGTTCATTCATGACCCTACGCAGA
EST: CGATCAGTTCCTCCGGGAGGCGCTCGAGAAGCCGAGGGAGCGGCTCTCTG TGCTAAGGATGGAGCAAGACATTTTGAAGTTCATTCATGACCCTACGCGGAEST: gi|29630436|gb|CB635445.1|CB635445
genomic: CGATCAGTTCCTCCGGGAGGCGCTCGAGAAGCCGAGGGAGCGGCTCTCTGgtataatatt ... ctcattgtagTGCTAAGGATGGAGCAAGACATTTTGAAGTTCATTCATGACCCTACGCAGA
EST: CGATCAGTTCCTCCGGGAGGCGCTCGAGAAGCCGAGGGAGCGGCTCTCTG TGCTAAGGATGGAGCAAGACATTTTGAAGTTCATTCATGACCCTACGCGGAEST: gi|88318141|gb|CI629422.1|CI629422
genomic: CGATCAGTTCCTCCGGGAGGCGCTCGAGAAGCCGAGGGAGCGGCTCTCTGgtataatatt ... ctcattgtagTGCTAAGGATGGAGCAAGACATTTTGAAGTTCATTCATGACCCTACGCAGA
EST: CGATCAGTTCCTCCGGGAGGCGCTCGAGAAGCCGAGGGAGCGGCTCTCTG TGCTAAGGATGGAGCA
genomic: CGATCAGTTCCTCCGGGAGGCGCTCGAGAAGCCGAGGGAGCGGCTCTCTGgtataatatt ... ctcattgtagTGCTAAGGATGGAGCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GACGACCCGCAGCACCCGTCGTCCGGTCGCCCCGATTCGGTTGACCAGCTCGATCAGTTCCTCCGGGAGGCGCTCGAGAAGCCGAGGGAGCGGCTCTCTGgtataatattcgaatccccatcccccctgctgcaccctcctctgcttcgtatcataggcctagctaccctgtttctacaagcagtaacaagtcgcacttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC